YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|16077472, gi|...
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 249 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16077472, gi|....

Description E-value Query
Range
Subject
Range
gi|52078942, gi|... - gi|52784317|ref|YP_090146.1| YcsE [Bacillus licheniformis ATCC 14580], gi|52346819|gb|AAU39453.1| Yc...
191.0 [0..1] [249..1]

Back

Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQREDVDI KLIAIDMDGT LLNDEQLISD ENRKAIREAE DKGVYVVIST GRTLMTCREL  60
   61 AESLKLSSFL ITANGSEIWD SNFNLVERKL LHTDHIQMMW DLRNKHNTNF WASTVNKVWR 120
  121 GEFPENITDH EWLKFGFDIE DDDIRNEVLE ELRKTKSSEI TNSSPTNIEV NALGINKAAA 180
  181 PCQGYGKLGF TMENVMAMGD SLNDIAMIKE AGLGVAMGNA QDIVKETADY ITDTNIEDGV 240
  241 AKAIRHWVL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 1rkqA
Description: Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.55296860681783 bayes_pls_golite062009
hydrolase activity 0.82377518695623 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle