YRC Public Data Repository - Protein Structure Prediction

Protein:	SSUA_BACSU
Organism:	Bacillus subtilis subsp. subtilis str. 168
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSUA_BACSU.

Description	E-value	Query Range	Subject Range
gi\|254760766 - gi\|254760766\|ref\|ZP_05212790.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|254752249 - gi\|254752249\|ref\|ZP_05204286.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|195995150, gi... - gi\|196032399\|ref\|ZP_03099813.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|190563468, gi... - gi\|190565441\|ref\|ZP_03018361.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|177649746, gi... - gi\|177649746\|ref\|ZP_02932748.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|170130343, gi... - gi\|170704542\|ref\|ZP_02895008.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|167637876, gi... - gi\|167637876\|ref\|ZP_02396155.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|167532340, gi... - gi\|167632042\|ref\|ZP_02390369.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|165869200, gi... - gi\|165869200\|ref\|ZP_02213860.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|49185719, gi\|... - gi\|49185719\|ref\|YP_028971.1\| sulfonate ABC transporter, sulfonate-binding protein, putative [Bacillu... gi\|47503362, gi\|... - gi\|47528214\|ref\|YP_019563.1\| sulfonate ABC transporter, sulfonate-binding protein, putative [Bacillu... gi\|30262880, gi\|... - gi\|30262880\|ref\|NP_845257.1\| sulfonate ABC transporter, sulfonate-binding protein, putative [Bacillu... gi\|227814275, gi... - gi\|227814275\|ref\|YP_002814284.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Baci... gi\|229599956, gi... - gi\|229599956\|ref\|YP_002867171.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Baci... gi\|229122459, gi... - gi\|229122459\|ref\|ZP_04251672.1\| aliphatic sulfonates-binding protein [Bacillus cereus 95/8201], gi\|2... gi\|228946523, gi... - gi\|228946523\|ref\|ZP_04108838.1\| aliphatic sulfonates-binding protein [Bacillus thuringiensis serovar... gi\|228831654, gi... - gi\|228927964\|ref\|ZP_04091009.1\| aliphatic sulfonates-binding protein [Bacillus thuringiensis serovar... gi\|254742892 - gi\|254742892\|ref\|ZP_05200577.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|254737935 - gi\|254737935\|ref\|ZP_05195638.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|254722885 - gi\|254722885\|ref\|ZP_05184673.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil... gi\|254685478 - gi\|254685478\|ref\|ZP_05149338.1\| putative sulfonate ABC transporter, sulfonate-binding protein [Bacil...	254.0	[0..3]	[325..6]

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Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKGLIVLVA VIFLLAGCGA NGASGDHKQL KEIRIGIQQS LSPLLIAKEK GWFEDAFEKE  60
   61 GIKVKWVEFQ SGPPQFEGLA ADKLDFSQVG NSPVIAGQAA GIDFKEIGLS QDGLKANGIL 120
  121 VNQNSGIQDV KGLKGKKIAV AKGSSGFDFL YKALDQVGLS ANDVTIIQLQ PDEAASAFEN 180
  181 GSVDAWSIWE PYLSLETMKH GAKILVNGES TDLYSPGFTL VRTKFSEEHP DEVVRFLKVF 240
  241 NKAVVWQKEH LDEAADLYSD IKDLDKKVVE NVLKNTEPLN EIISDDIVKA QQETADFQFR 300
  301 TKAIDKKIDV KDVVDNTFIK KALEEHSSGG DQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.221849
Match:	2g29A
Description:	No description for 2g29A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits