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View Structure Prediction Details

Protein: gi|2634125, gi|1...
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2634125, gi|1....

Description E-value Query
Range
Subject
Range
gi|221318866 - gi|221318866|ref|ZP_03600160.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili...
gi|221313943 - gi|221313943|ref|ZP_03595748.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili...
CWLC_BACSU - Sporulation-specific N-acetylmuramoyl-L-alanine amidase OS=Bacillus subtilis (strain 168) GN=cwlC PE...
CWLC_BACSU - Sporulation-specific N-acetylmuramoyl-L-alanine amidase OS=Bacillus subtilis GN=cwlC PE=1 SV=1
gi|221323138 - gi|221323138|ref|ZP_03604432.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili...
262.0 [0..1] [255..1]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIFIDPGH GGSDPGATGN GLQEKTLTLQ IALALRTILT NEYEGVSLLL SRTSDQYVSL  60
   61 NDRTNAANNW GADFFLSIHV NSGGGTGFES YIYPDVGAPT TTYQSTIHSE VIQAVDFADR 120
  121 GKKTANFHVL RESAMPALLT ENGFIDTVSD ANKLKTSTFI QSLARGHANG LEQAFNLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 1jwqA
Description: Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [179-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTSSSGLYKV QIGAFKVKAN ADSLASNAEA KGFDSIVLLK DGLYKVQIGA FSSKDNADTL  60
   61 AARAKNAGFD AIVILES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 1x60A
Description: Solution structure of the peptidoglycan binding domain of B. subtilis cell wall lytic enzyme CwlC
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle