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View Structure Prediction Details

Protein: END4_BACSU
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for END4_BACSU.

Description E-value Query
Range
Subject
Range
END4_STAEP - (Q8CP25) Probable endonuclease IV (EC 3.1.21.2) (Endodeoxyribonuclease IV)
END4_STAES - Probable endonuclease 4 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=nfo PE=3 SV=1
END4_STAEQ - Probable endonuclease 4 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=nfo PE=3 SV=1
264.0 [0..2] [297..1]

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Predicted Domain #1
Region A:
Residues: [1-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIGSHVSM SGKHMLLAAS QEAVSYGANT FMIYTGAPQN TRRKKIEDLN IEAGRAHMQE  60
   61 NGIDEIIVHA PYIINIGNTT NPSTFELGVD FLRSEIERTA AIGAKQIVLH PGAHVGAGAE 120
  121 AGIKKIIEGL NEVIDPNQNV QIALETMAGK GSECGRSFEE LAQIIEGVTH NEQLSVCFDT 180
  181 CHTHDAGYNI VEDFDGVLNE FDKIIGIDRI KVLHINDSKN VKGARKDRHE NIGFGEIGFD 240
  241 ALQYVVHHEQ LKDIPKILET PYVGEDKKNK KPPYRFEIEM LKEKQFDDTL LEKILQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.30103
Match: 1xp3A
Description: Crystal Structure of Endonuclease IV (BA4508) from Bacillus anthracis at 2.57A Resolution.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.66019571685402 bayes_pls_golite062009
deoxyribonuclease activity 0.97458966528485 bayes_pls_golite062009
DNA-(apurinic or apyrimidinic site) lyase activity 0.36517654808269 bayes_pls_golite062009
endodeoxyribonuclease activity 0.19550406288989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle