YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25496584
Organism:	Clostridium acetobutylicum
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25496584.

Description	E-value	Query Range	Subject Range
gi\|86747949, gi\|... - gi\|86747949\|ref\|YP_484445.1\| NAD(P)H dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2], gi\|8...	157.0	[0..1]	[195..1]
gi\|14027243, gi\|... - gi\|14027243\|dbj\|BAB54197.1\| quinone reductase [Mesorhizobium loti MAFF303099], gi\|13476482\|ref\|NP_10...	156.0	[0..1]	[196..1]
gi\|73668836, gi\|... - gi\|73668836\|ref\|YP_304851.1\| putative NAD(P)H oxidoreductase(quinone) [Methanosarcina barkeri str. F...	155.0	[0..1]	[192..1]
gi\|67532185, gi\|... - gi\|67546461\|ref\|ZP_00424374.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia vietnamiensis G4], gi\|6...	154.0	[0..1]	[195..1]
gi\|15966669 - gi\|15966669\|ref\|NP_387022.1\| putative NADPH dehydrogenase quinone reductase transmembrane protein [S... gi\|15075941 - gi\|15075941\|emb\|CAC47495.1\| Putative NADPH dehydrogenase quinone reductase transmembrane protein [Si...	154.0	[0..1]	[192..1]
gi\|1827606, gi\|1... - gi\|1827607\|pdb\|1QRD\|B Chain B, Quinone ReductaseFADCIBACRON BLUEDUROQUINONE COMPLEX, gi\|1827606\|pdb\|... NQO1_RAT - (P05982) NAD(P)H dehydrogenase [quinone] 1 (EC 1.6.5.2) (Quinone reductase 1) (NAD(P)H:quinone oxido...	153.0	[0..2]	[195..4]
gi\|48771903, gi\|... - gi\|94312949\|ref\|YP_586158.1\| NAD(P)H dehydrogenase (quinone) [Ralstonia metallidurans CH34], gi\|9335...	153.0	[0..1]	[195..1]
NQO1_RAT - NAD(P)H dehydrogenase [quinone] 1 OS=Rattus norvegicus GN=Nqo1 PE=1 SV=4 gi\|200084, gi\|21... - gi\|2137583\|pir\|\|I52851 NAD(P)H2 dehydrogenase (quinone) (EC 1.6.99.2) 1 [similarity] - mouse, gi\|200...	153.0	[0..2]	[195..5]
gi\|76583453, gi\|... - gi\|76818980\|ref\|YP_336868.1\| quinone reductase [Burkholderia pseudomallei 1710b], gi\|76583453\|gb\|ABA...	153.0	[0..1]	[196..33]
gi\|218774300, gi... - gi\|218894072\|ref\|YP_002442941.1\| NAD(P)H quinone oxidoreductase [Pseudomonas aeruginosa LESB58], gi\|... gi\|11350638 - pir\|\|E83024 NAD(P)H quinone oxidoreductase PA4975 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116053123, gi... - gi\|53726537\|ref\|ZP_00141447.2\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|9951258, gi\|1... - gi\|9951258\|gb\|AAG08360.1\|AE004910_7 NAD(P)H quinone oxidoreductase [Pseudomonas aeruginosa PAO1], gi... gi\|194555122, gi... - gi\|84323681\|ref\|ZP_00971749.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|107104074 - gi\|107104074\|ref\|ZP_01367992.1\| hypothetical protein PaerPA_01005147 [Pseudomonas aeruginosa PACS2]	152.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLIVFAHP NPNSFGKGIL DEVVKASEES GAAVRIRDLY QLGFDPILKP ADFETFQRGE  60
   61 VPQDIKDEQE NVKWANMITF IYPVWWAGLP AMLKGYVDRV YSYGFAYEYV DGQPRGLLTG 120
  121 KKALIFCTTG TPSDVYGANG MHNSMKQTTD EGIFKFCGIE EVRHNFFGAV PHVSDEIRKD 180
  181 YLRAASEIVK EHISSSKSFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.522879
Match:	1qrdA
Description:	NAD(P)H:quinone reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009
binding	0.159285483239364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: