YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15893986, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15893986, gi|....

Description	E-value	Query Range	Subject Range
gi\|18310294, gi\|... - gi\|18310294\|ref\|NP_562228.1\| HAD hydrolase, IIB family [Clostridium perfringens str. 13], gi\|1814497...	180.0	[0..1]	[275..1]
gi\|182379797, gi... - gi\|182379797\|gb\|EDT77276.1\| HAD hydrolase, IIB family [Clostridium perfringens NCTC 8239], gi\|168218... gi\|110674966, gi... - gi\|110800319\|ref\|YP_695962.1\| HAD family hydrolase [Clostridium perfringens ATCC 13124], gi\|11067496...	178.0	[0..1]	[275..1]
gi\|106773879, gi... - gi\|158319955\|ref\|YP_001512462.1\| Cof-like hydrolase [Alkaliphilus oremlandii OhILAs], gi\|158140154\|g...	177.0	[0..1]	[274..1]
gi\|110803686, gi... - gi\|110803686\|ref\|YP_698631.1\| HAD family hydrolase [Clostridium perfringens SM101], gi\|110684187\|gb\|...	177.0	[0..1]	[275..1]
gi\|60491192, gi\|... - gi\|60679758\|ref\|YP_209902.1\| putative haloacid dehalogenase-like hydrolase [Bacteroides fragilis NCT...	174.0	[0..1]	[275..1]
gi\|28202558, gi\|... - gi\|28210122\|ref\|NP_781066.1\| hydrolase [Clostridium tetani E88], gi\|28202558\|gb\|AAO35003.1\| predicte...	174.0	[0..1]	[272..1]
gi\|52214354, gi\|... - gi\|53711489\|ref\|YP_097481.1\| haloacid dehalogenase-like hydrolase [Bacteroides fragilis YCH46], gi\|5...	173.0	[0..1]	[275..1]
gi\|16799375 - gi\|16799375\|ref\|NP_469643.1\| hypothetical protein lin0298 [Listeria innocua Clip11262] gi\|25303672, gi\|... - pir\|\|AC1470 conserved hypothetical protein B. subtilis YxeH protein homolog lin0298 [imported] - Lis...	173.0	[0..3]	[275..2]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYKLICVDM DGTVLDDEKK ISNENIEAMK RAHDAGVKIA ICTGRLFASA LAYSDILGVK  60
   61 APLIASNGGY IREKDNDNVI YESYLKNEEA KDIYHIIEKY NVSMFFNTYN TVISNKEFEE 120
  121 NYTYNKFNDN LPKEKRVKLV YPKNMDKFLE ENVGEILKCI CIDKDVEKLK LLRKEIESLN 180
  181 RFDVVSSGEF NFEIMPKGVS KGKAVKMLAA FYNIKQDEVI CIGDNENDLS MIKCAGIGIA 240
  241 MGNAEDSIKQ IADYVTDTNN NSGVAKAIDK FIFNEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.154902
Match:	1nrwA
Description:	Hypothetical protein YwpJ
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.996930438913923	bayes_pls_golite062009
phosphatase activity	0.0985887286442809	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.0342238658800214	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: