YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15894665, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15894665, gi|....

Description	E-value	Query Range	Subject Range
gi\|28203970, gi\|... - gi\|28211529\|ref\|NP_782473.1\| metal dependent hydrolase [Clostridium tetani E88], gi\|28203970\|gb\|AAO3...	138.0	[0..7]	[242..4]
gi\|149904601, gi... - gi\|82748436\|ref\|ZP_00910920.1\| Zn-dependent hydrolases, glyoxylase family [Clostridium beijerincki N...	137.0	[0..1]	[238..1]
gi\|42737425, gi\|... - gi\|42781502\|ref\|NP_978749.1\| hydrolase, putative [Bacillus cereus ATCC 10987], gi\|42737425\|gb\|AAS413...	130.0	[0..1]	[241..1]
gi\|163862379, gi... - gi\|89208236\|ref\|ZP_01186752.1\| Beta-lactamase-like [Bacillus weihenstephanensis KBAB4], gi\|89153822\|...	130.0	[0..1]	[241..1]
gi\|74490998, gi\|... - gi\|75761518\|ref\|ZP_00741479.1\| Metal-dependent hydrolase [Bacillus thuringiensis serovar israelensis... gi\|228858692, gi... - gi\|228900994\|ref\|ZP_04065207.1\| Metal-dependent hydrolase [Bacillus thuringiensis IBL 4222], gi\|2288...	126.0	[0..1]	[234..1]
gi\|52143077, gi\|... - gi\|52143077\|ref\|YP_083752.1\| metal-dependent hydrolase [Bacillus cereus E33L], gi\|51976546\|gb\|AAU180...	126.0	[0..1]	[235..1]
gi\|177649547, gi... - gi\|177649547\|ref\|ZP_02932549.1\| putative hydrolase [Bacillus anthracis str. A0174], gi\|172084621\|gb\|... gi\|170128469, gi... - gi\|170706738\|ref\|ZP_02897197.1\| putative hydrolase [Bacillus anthracis str. A0389], gi\|170128469\|gb\|... gi\|195993610, gi... - gi\|196033930\|ref\|ZP_03101341.1\| putative hydrolase [Bacillus cereus W], gi\|195993610\|gb\|EDX57567.1\| ... gi\|190563382, gi... - gi\|190565355\|ref\|ZP_03018275.1\| putative hydrolase [Bacillus anthracis Tsiankovskii-I], gi\|190563382... gi\|218903538, gi... - gi\|218903538\|ref\|YP_002451372.1\| putative hydrolase [Bacillus cereus AH820], gi\|218539634\|gb\|ACK9203... gi\|196029293, gi... - gi\|196040034\|ref\|ZP_03107337.1\| putative hydrolase [Bacillus cereus NVH0597-99], gi\|196029293\|gb\|EDX... gi\|167531868, gi... - gi\|167633056\|ref\|ZP_02391382.1\| putative hydrolase [Bacillus anthracis str. A0442], gi\|167531868\|gb\|... gi\|165870505, gi... - gi\|165870505\|ref\|ZP_02215159.1\| putative hydrolase [Bacillus anthracis str. A0488], gi\|164713660\|gb\|... gi\|170686952, gi... - gi\|170686952\|ref\|ZP_02878171.1\| putative hydrolase [Bacillus anthracis str. A0465], gi\|170669003\|gb\|... gi\|167639694, gi... - gi\|167639694\|ref\|ZP_02397964.1\| putative hydrolase [Bacillus anthracis str. A0193], gi\|167512403\|gb\|... gi\|49479937, gi\|... - gi\|49479937\|ref\|YP_036502.1\| metal-dependent hydrolase [Bacillus thuringiensis serovar konkukian str... gi\|49179177, gi\|... - gi\|49185250\|ref\|YP_028502.1\| hydrolase, putative [Bacillus anthracis str. Sterne], gi\|49179177\|gb\|AA... gi\|47527698, gi\|... - gi\|47527698\|ref\|YP_019047.1\| hydrolase, putative [Bacillus anthracis str. 'Ames Ancestor'], gi\|47502... gi\|227814783, gi... - gi\|227814783\|ref\|YP_002814792.1\| putative hydrolase [Bacillus anthracis str. CDC 684], gi\|227007175\|... gi\|228832174, gi... - gi\|228927455\|ref\|ZP_04090510.1\| Metal-dependent hydrolase [Bacillus thuringiensis serovar pondicheri... gi\|228813654, gi... - gi\|228946008\|ref\|ZP_04108348.1\| Metal-dependent hydrolase [Bacillus thuringiensis serovar monterrey ... gi\|228692009, gi... - gi\|229091380\|ref\|ZP_04222595.1\| Metal-dependent hydrolase [Bacillus cereus Rock3-42], gi\|228692009\|g... gi\|228661476, gi... - gi\|229121948\|ref\|ZP_04251166.1\| Metal-dependent hydrolase [Bacillus cereus 95/8201], gi\|228661476\|gb... gi\|229601481, gi... - gi\|229601481\|ref\|YP_002866737.1\| putative hydrolase [Bacillus anthracis str. A0248], gi\|229265889\|gb... gi\|254684981 - gi\|254684981\|ref\|ZP_05148841.1\| putative hydrolase [Bacillus anthracis str. CNEVA-9066] gi\|254722388 - gi\|254722388\|ref\|ZP_05184176.1\| putative hydrolase [Bacillus anthracis str. A1055] gi\|254737428 - gi\|254737428\|ref\|ZP_05195132.1\| putative hydrolase [Bacillus anthracis str. Western North America US... gi\|30262405, gi\|... - gi\|30262405\|ref\|NP_844782.1\| hydrolase, putative [Bacillus anthracis str. Ames], gi\|30257036\|gb\|AAP2... gi\|254743387 - gi\|254743387\|ref\|ZP_05201072.1\| putative hydrolase [Bacillus anthracis str. Kruger B] gi\|21400278, gi\|... - gi\|65319704\|ref\|ZP_00392663.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Bacillus ant... gi\|254751744 - gi\|254751744\|ref\|ZP_05203781.1\| putative hydrolase [Bacillus anthracis str. Vollum] gi\|254760262 - gi\|254760262\|ref\|ZP_05212286.1\| putative hydrolase [Bacillus anthracis str. Australia 94]	126.0	[0..1]	[235..1]
gi\|30020471, gi\|... - gi\|30020471\|ref\|NP_832102.1\| metal-dependent hydrolase [Bacillus cereus ATCC 14579], gi\|29896022\|gb\|...	126.0	[0..1]	[235..1]
gi\|110682667, gi... - gi\|110802166\|ref\|YP_698413.1\| rubredoxin/flavodoxin/oxidoreductase [Clostridium perfringens SM101], ...	123.0	[0..1]	[243..4]
gi\|18144675, gi\|... - gi\|18309996\|ref\|NP_561930.1\| rubredoxin/flavodoxin/oxidoreductase [Clostridium perfringens str. 13],...	123.0	[0..1]	[243..4]

Back

Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVDGVEML ELESNVMGKK SVINVTLLYD EENVVLVDTG FPGMSAYIRE AVEKAGVALD  60
   61 KVNKIILTHQ DIDHIGSLAS IIKESNKKIE VFSHEEEKPY IEGTKTPLKL VKFQDKANTS 120
  121 DQIRAICEKL KIGFEMAKSP VNTTLKDGEK LPFCGGIEVI QTPGHTFGHI CLYIEKSKLL 180
  181 IAGDALGAQD GVLMLADPLF DFDSNLSKKS LEKLTKYDIE TVICYHGGLV KGNVNERIKE 240
  241 LIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1smlA
Description:	Zn metallo-beta-lactamase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.31184084417389	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: