YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25498311
Organism:	Clostridium acetobutylicum
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25498311.

Description	E-value	Query Range	Subject Range
gi\|20517474, gi\|... - gi\|20808823\|ref\|NP_623994.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20808823 - gi\|20808823\|ref\|NP_623994.1\| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis M...	139.0	[0..1]	[121..1]
gi\|242229937, gi... - gi\|242258539\|ref\|ZP_04803326.1\| transcriptional regulator, ArsR family [Thermoanaerobacter sp. X513]... gi\|166854047, gi... - gi\|167039807\|ref\|YP_001662792.1\| regulatory protein, ArsR [Thermoanaerobacter sp. X514], gi\|16685404...	138.0	[0..1]	[121..1]
gi\|82401815, gi\|... - gi\|82500190\|ref\|ZP_00885615.1\| regulatory protein, ArsR [Caldicellulosiruptor saccharolyticus DSM 89...	133.0	[0..1]	[122..1]
gi\|158141387, gi... - gi\|158321188\|ref\|YP_001513695.1\| ArsR family transcriptional regulator [Alkaliphilus oremlandii OhIL...	133.0	[0..1]	[122..1]
gi\|77686824, gi\|... - gi\|77686824\|ref\|ZP_00802144.1\| regulatory protein, ArsR [Alkaliphilus metalliredigenes QYMF], gi\|776...	132.0	[0..1]	[122..1]
gi\|67916590, gi\|... - gi\|67916590\|ref\|ZP_00510294.1\| regulatory protein, ArsR [Clostridium thermocellum ATCC 27405], gi\|67...	132.0	[0..5]	[121..20]
gi\|89336824, gi\|... - gi\|89897376\|ref\|YP_520863.1\| hypothetical protein DSY4630 [Desulfitobacterium hafniense Y51], gi\|893...	130.0	[0..1]	[121..1]
gi\|242258589, gi... - gi\|242258589\|ref\|ZP_04803365.1\| transcriptional regulator, ArsR family [Thermoanaerobacter sp. X513]... gi\|241884097, gi... - gi\|241903582\|ref\|ZP_04788304.1\| transcriptional regulator, ArsR family [Thermoanaerobacter brockii s... gi\|166853664, gi... - gi\|167039424\|ref\|YP_001662409.1\| regulatory protein, ArsR [Thermoanaerobacter sp. X514], gi\|16685366... gi\|167036704, gi... - gi\|76796107\|ref\|ZP_00778475.1\| regulatory protein, ArsR [Thermoanaerobacter ethanolicus ATCC 33223],...	130.0	[0..1]	[121..1]
gi\|149902793, gi... - gi\|82746500\|ref\|ZP_00909006.1\| regulatory protein, ArsR [Clostridium beijerincki NCIMB 8052], gi\|827...	129.0	[0..4]	[122..2]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQNQNNSDL CEANVIHVDT VEKVRKQMPE DEELYELSDL FKVFGDSTRI KIICALFKEE  60
   61 MCVCDIAYLL QMKQSAISHQ LKILRQSKLV KYRREGKVVY YSLDDEHIKE IFNMGLMHIN 120
  121 EK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1u2wA
Description:	Crystal Structure of the Staphylococcus aureus pI258 CadC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: