YRC Public Data Repository - Protein Structure Prediction

Protein:	RUBY1_CLOAB
Organism:	Clostridium acetobutylicum ATCC 824
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUBY1_CLOAB.

Description	E-value	Query Range	Subject Range
gi\|28204650, gi\|... - gi\|28212206\|ref\|NP_783150.1\| rubrerythrin [Clostridium tetani E88], gi\|28204650\|gb\|AAO37087.1\| rubre...	211.0	[0..1]	[195..1]
gi\|83573048, gi\|... - gi\|83590134\|ref\|YP_430143.1\| rubrerythrin [Moorella thermoacetica ATCC 39073], gi\|83573048\|gb\|ABC196... gi\|6449424 - gi\|6449424\|gb\|AAF08979.1\| rubrerythrin [Moorella thermoacetica]	202.0	[0..1]	[195..1]
gi\|196253713, gi... - gi\|196253713\|ref\|ZP_03152327.1\| Rubrerythrin [Clostridium thermocellum DSM 4150], gi\|196196880\|gb\|ED... gi\|67916464, gi\|... - gi\|67916464\|ref\|ZP_00510174.1\| Rubrerythrin [Clostridium thermocellum ATCC 27405], gi\|67849599\|gb\|EA...	199.0	[0..1]	[195..1]
gi\|93454725, gi\|... - gi\|94264844\|ref\|ZP_01288620.1\| Rubrerythrin:Rubredoxin-type Fe(Cys)4 protein [delta proteobacterium ...	199.0	[0..1]	[195..44]
gi\|150015178, gi... - gi\|82747596\|ref\|ZP_00910091.1\| rubrerythrin [Clostridium beijerincki NCIMB 8052], gi\|82724496\|gb\|EAP...	197.0	[0..1]	[195..1]
gi\|7447637 - pir\|\|A69201 rubrerythrin - Methanobacterium thermoautotrophicum (strain Delta H) gi\|15678781, gi\|... - gi\|2621845\|gb\|AAB85259.1\| rubrerythrin [Methanothermobacter thermautotrophicus str. Delta H], gi\|156...	193.0	[0..1]	[195..1]
gi\|68184321, gi\|... - gi\|91774289\|ref\|YP_566981.1\| rubrerythrin [Methanococcoides burtonii DSM 6242], gi\|91713304\|gb\|ABE53...	192.0	[0..1]	[195..1]
gi\|118580382, gi... - gi\|71838354\|ref\|ZP_00678114.1\| Rubrerythrin [Pelobacter propionicus DSM 2379], gi\|71741255\|gb\|EAO364...	190.0	[0..1]	[195..1]
gi\|110675702, gi... - gi\|110801055\|ref\|YP_694597.1\| rubrerythrin [Clostridium perfringens ATCC 13124], gi\|110675702\|gb\|ABG... gi\|170662784, gi... - gi\|170662784\|gb\|EDT15467.1\| rubrerythrin [Clostridium perfringens E str. JGS1987], gi\|168205707\|ref\|... gi\|170711733, gi... - gi\|170711733\|gb\|EDT23915.1\| rubrerythrin [Clostridium perfringens B str. ATCC 3626], gi\|168210185\|re... gi\|182380055, gi... - gi\|182380055\|gb\|EDT77534.1\| rubrerythrin [Clostridium perfringens NCTC 8239], gi\|168217908\|ref\|ZP_02... gi\|169342227, gi... - gi\|169342227\|ref\|ZP_02863310.1\| rubrerythrin [Clostridium perfringens C str. JGS1495], gi\|169299711\|... gi\|177910011, gi... - gi\|182624801\|ref\|ZP_02952581.1\| rubrerythrin [Clostridium perfringens D str. JGS1721], gi\|177910011\|...	190.0	[0..1]	[195..1]
gi\|39997907, gi\|... - gi\|39997907\|ref\|NP_953858.1\| rubrerythrin [Geobacter sulfurreducens PCA], gi\|39984852\|gb\|AAR36208.1\|...	190.0	[0..3]	[195..2]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLKGTKTA ENLMKAFAGE SQARNRYTFY SNTAKKEGYV QISNIFLETA ENERMHAKRF  60
   61 FKFLSEGLDD EAVEINGASY PTTLGDTKKN LIAAAKGENE EWTDLYPSFA KTAEDEGFKG 120
  121 VAAAFRLIAA VEKEHEKRYN ALLKNIEENK VFEKDEVKFW KCIKCGYIFE GKTAPKVCPA 180
  181 CLHPQAYFEI LSENY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1b71A
Description:	Rubrerythrin, N-terminal domain; Rubrerythrin, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	0.965308156844803	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	0.965308156844803	bayes_pls_golite062009
binding	0.384332331442434	bayes_pls_golite062009
catalytic activity	0.176396048613815	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: