YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15896585, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15896585, gi|....

Description	E-value	Query Range	Subject Range
gi\|56419562, gi\|... - gi\|56419562\|ref\|YP_146880.1\| 3-hydroxyisobutyrate dehydrogenase [Geobacillus kaustophilus HTA426], g...	218.0	[0..6]	[289..2]
gi\|49478504, gi\|... - gi\|49478504\|ref\|YP_038103.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar konk... gi\|218905179, gi... - gi\|218905179\|ref\|YP_002453013.1\| 2-hydroxy-3-oxopropionate reductase [Bacillus cereus AH820], gi\|218... gi\|52141450, gi\|... - gi\|52141450\|ref\|YP_085380.1\| 3-hydroxyisobutyrate dehydrogenase; 6-phosphogluconate dehydrogenase [B... gi\|196034924, gi... - gi\|196034924\|ref\|ZP_03102331.1\| 2-hydroxy-3-oxopropionate reductase [Bacillus cereus W], gi\|19599246... gi\|228811750, gi... - gi\|228947763\|ref\|ZP_04110050.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar m... gi\|228935363, gi... - gi\|228935363\|ref\|ZP_04098183.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar a... gi\|228830382, gi... - gi\|228929092\|ref\|ZP_04092119.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar p... gi\|228842870, gi... - gi\|228916683\|ref\|ZP_04080248.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus thuringiensis serovar p... gi\|228659701, gi... - gi\|229123566\|ref\|ZP_04252761.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus cereus 95/8201], gi\|228...	211.0	[0..1]	[289..1]
gi\|219537635, gi... - gi\|219667375\|ref\|YP_002457810.1\| 6-phosphogluconate dehydrogenase NAD-binding [Desulfitobacterium ha... gi\|89896794, gi\|... - gi\|89896794\|ref\|YP_520281.1\| hypothetical protein DSY4048 [Desulfitobacterium hafniense Y51], gi\|893...	211.0	[0..1]	[291..1]
gi\|52079994, gi\|... - gi\|52785369\|ref\|YP_091198.1\| YkwC [Bacillus licheniformis ATCC 14580], gi\|52347871\|gb\|AAU40505.1\| Yk...	211.0	[0..5]	[291..2]
gi\|29897686, gi\|... - gi\|30022129\|ref\|NP_833760.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus cereus ATCC 14579], gi\|298... gi\|229129323, gi... - gi\|229129323\|ref\|ZP_04258294.1\| 3-hydroxyisobutyrate dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|2...	209.0	[0..1]	[289..1]
gi\|26347027 - gi\|26347027\|dbj\|BAC37162.1\| unnamed protein product [Mus musculus]	209.0	[0..2]	[292..35]
gi\|47565924, gi\|... - gi\|47565924\|ref\|ZP_00236963.1\| 2-hydroxy-3-oxopropionate reductase [Bacillus cereus G9241], gi\|47557...	209.0	[0..1]	[289..1]
gi\|47125249, gi\|... - gi\|47125249\|gb\|AAH70849.1\| MGC84587 protein [Xenopus laevis], gi\|147898679\|ref\|NP_001084759.1\| hypot...	209.0	[0..2]	[292..29]
gi\|219667232, gi... - gi\|68207984\|ref\|ZP_00560124.1\| 2-hydroxy-3-oxopropionate reductase [Desulfitobacterium hafniense DCB...	209.0	[0..6]	[291..1]

Back

Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINKNTKIGF IGTGVMGKGM IKNLLKGGYT VHVYNRTKEK ALPLVEIGAV LETSIKELSQ  60
   61 RCDVIITMVG YPSDVEEVYF NDNGILNNLK PQSYVVDMTT SKPSLAKKIY AAAKERNIFA 120
  121 LDAPVSGGDI GAAEGTLSIM VGGDKEAFDA LMPIFELMGK NIVLQGSAGS GQHTKMCNQI 180
  181 AIASNIMGVC EALSYAKKSG LNAETVLKSI GAGGAASWQL SAYAPRILKG DFNPGFYIKH 240
  241 FVKDMKIALE EADEMGLKTP ALELSKKLYD KLIKEGKEDL GTQALYHLYN ED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	1yb4A
Description:	Crystal Structure of the Tartronic Semialdehyde Reductase from Salmonella typhimurium LT2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits