YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1786449, gi\|1...
Organism:	Escherichia coli K-12
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1786449, gi|1....

Description	E-value	Query Range	Subject Range
gi\|221589257, gi... - gi\|84060922\|ref\|YP_444134.1\| IS911 transposase [Escherichia coli], gi\|76781996\|gb\|AAX22069.2\| IS911 ...	150.0	[0..1]	[134..1]
gi\|37518400 - gi\|37518400\|emb\|CAD58552.1\| hypothetical protein [Yersinia enterocolitica] gi\|124499896, gi... - gi\|124529438\|ref\|ZP_01700442.1\| transposase IS3/IS911 family protein [Escherichia coli B], gi\|124499... gi\|170021397, gi... - gi\|170021397\|ref\|YP_001726351.1\| transposase IS3/IS911 family protein [Escherichia coli ATCC 8739], ...	131.0	[0..13]	[134..1]
gi\|251786920, gi... - gi\|251786920\|ref\|YP_003001224.1\| hypothetical protein B21_03480 [Escherichia coli BL21], gi\|24237919... gi\|254163604, gi... - gi\|254163604\|ref\|YP_003046712.1\| predicted IS protein [Escherichia coli B str. REL606], gi\|253975505... gi\|194435926, gi... - gi\|83588478\|ref\|ZP_00927102.1\| COG2963: Transposase and inactivated derivatives [Escherichia coli 10... gi\|253771487, gi... - gi\|254290354\|ref\|YP_003056102.1\| predicted IS protein [Escherichia coli BL21(DE3)], gi\|253979661\|gb\|...	128.0	[0..13]	[134..1]
gi\|94541132, gi\|... - gi\|94541132\|ref\|YP_588475.1\| transposase [Escherichia coli K12], gi\|87082409\|gb\|ABD18713.1\| KpLE2 ph...	115.0	[0..11]	[134..1]
INSN_SHIDY - Transposase InsN for insertion sequence element IS911 OS=Shigella dysenteriae GN=insN PE=3 SV=1	112.0	[0..1]	[112..1]
gi\|62128900, gi\|... - gi\|62181267\|ref\|YP_217684.1\| transposase insN [Salmonella enterica subsp. enterica serovar Choleraes...	111.0	[0..1]	[112..1]
gi\|31983618, gi\|... - gi\|31983618\|ref\|NP_858401.1\| IS911 ORF1 [Shigella flexneri 2a str. 301], gi\|24115424\|ref\|NP_709934.1... gi\|31983618, gi\|... - gi\|31983618\|ref\|NP_858401.1\| IS911 ORF1 [Shigella flexneri 2a str. 301], gi\|18462610\|gb\|AAL72382.1\| ...	110.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICSPQNNTG VIMKKRNFSA EFKRESAQLV VDQNYTVADA ASAMDVGLST MTRWVKQLRD  60
   61 ERQGKTPKAS PITPEQIEIR ELRKKLQRIE MENEILKKAT VDSIGQRNSY VKTWGCGGFL 120
  121 NETNIYSRGK SLCF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.522879
Match:	2jn6A
Description:	No description for 2jn6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits