YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30040208, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30040208, gi|....

Description	E-value	Query Range	Subject Range
gi\|36787146, gi\|... - gi\|37527710\|ref\|NP_931055.1\| DNA-binding transcriptional repressor AcrR [Photorhabdus luminescens su...	151.0	[0..1]	[202..1]
gi\|189369138, gi... - gi\|189369138\|gb\|EDU87554.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4501], g... gi\|217322149, gi... - gi\|217325928\|ref\|ZP_03442012.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. TW1458... gi\|25324178, gi\|... - pir\|\|A85544 acrAB operon repressor [imported] - Escherichia coli (strain O157:H7, substrain EDL933)... gi\|12513331, gi\|... - gi\|15800193\|ref\|NP_286205.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli O157:H7 ED... gi\|13359974, gi\|... - gi\|15829771\|ref\|NP_308544.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli O157:H7 st... gi\|13359974, gi\|... - gi\|15829771\|ref\|NP_308544.1\| acrAB operon repressor [Escherichia coli O157:H7], gi\|13359974\|dbj\|BAB3...	150.0	[0..1]	[215..1]
gi\|197284045, gi... - gi\|197284045\|ref\|YP_002149917.1\| acrAB operon repressor (tetR-family transcriptional regulator) [Pro... gi\|227358084, gi... - gi\|227358084\|ref\|ZP_03842426.1\| acrAB operon repressor (tetR-family transcriptional regulator) [Prot... gi\|17973458 - gi\|17973458\|gb\|AAL32124.1\| regulatory protein AcrR [Proteus mirabilis]	149.0	[0..1]	[205..1]
gi\|71557188, gi\|... - gi\|71736635\|ref\|YP_276142.1\| transcriptional regulator TtgR [Pseudomonas syringae pv. phaseolicola 1...	148.0	[0..1]	[209..1]
gi\|213924937, gi... - gi\|213970265\|ref\|ZP_03398395.1\| transcriptional regulator, TetR family [Pseudomonas syringae pv. tom... gi\|28854690, gi\|... - gi\|28871439\|ref\|NP_794058.1\| TetR family transcriptional regulator [Pseudomonas syringae pv. tomato ... tr\|Q87X86\|Q87X86... - Transcriptional regulator, TetR family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4...	148.0	[0..1]	[215..1]
gi\|238729078, gi... - gi\|77979365\|ref\|ZP_00834784.1\| COG1309: Transcriptional regulator [Yersinia intermedia ATCC 29909], ...	148.0	[0..1]	[215..1]
gi\|50120110, gi\|... - gi\|50120110\|ref\|YP_049277.1\| DNA-binding transcriptional repressor AcrR [Pectobacterium atrosepticum...	148.0	[0..1]	[212..1]
gi\|238720628, gi... - gi\|77962350\|ref\|ZP_00826171.1\| COG1309: Transcriptional regulator [Yersinia mollaretii ATCC 43969], ...	147.0	[0..1]	[215..1]
gi\|33520754 - gi\|33520754\|gb\|AAQ21214.1\| putative repressor for the acrAB genes [Erwinia amylovora]	146.0	[0..1]	[212..1]
gi\|238715455, gi... - gi\|77957227\|ref\|ZP_00821288.1\| COG1309: Transcriptional regulator [Yersinia bercovieri ATCC 43970], ...	146.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKTKQEAQ ETRQHILDVA LRLFSQQGVS STSLGEIAKA AGVTRGAIYW HFKDKSDLFS  60
   61 EIWELSESNI GELELEYQAK FPGDPLSVLR EILIHVLEST VTEERRRLLM EIIFHKCEFV 120
  121 GEMAVVQQAQ RNLCLESYDR IEQTLKHCIE AKMLPADLMT RRAAIIMRGY ISGLMENWLF 180
  181 APQSFDLKKE ARDYVAILLE MYLLCPTLRN PATNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	2uxhA
Description:	No description for 2uxhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits