YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1787618, gi\|1...
Organism:	Escherichia coli K-12
Length:	59 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1787618, gi|1....

Description	E-value	Query Range	Subject Range
gi\|13361405, gi\|... - gi\|15831194\|ref\|NP_309967.1\| hypothetical protein ECs1940 [Escherichia coli O157:H7], gi\|13361405\|db... gi\|25499410, gi\|... - pir\|\|F85747 unknown protein encoded within prophage CP-933R [imported] - Escherichia coli (strain O1... gi\|13361405, gi\|... - gi\|15831194\|ref\|NP_309967.1\| hypothetical protein ECs1940 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|12515394, gi\|... - gi\|15801810\|ref\|NP_287828.1\| hypothetical protein Z2402 [Escherichia coli O157:H7 EDL933], gi\|125153... gi\|209918600, gi... - gi\|209918600\|ref\|YP_002292684.1\| hypothetical protein ECSE_1409 [Escherichia coli SE11], gi\|20991185...	116.0	[0..1]	[59..1]
gi\|189367030, gi... - gi\|189404184\|ref\|ZP_03007363.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|169888870, gi... - gi\|170081035\|ref\|YP_001730355.1\| Rac prophage; protein [Escherichia coli str. K-12 substr. DH10B], g... gi\|217317520, gi... - gi\|217329081\|ref\|ZP_03445161.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YDAG_ECOLI - Hypothetical protein ydaG - Escherichia coli gi\|194423935, gi... - gi\|194436952\|ref\|ZP_03069051.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442393... gi\|85674920, gi\|... - gi\|89108204\|ref\|AP_001984.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG12174 - Rac prophage; uncharacterized protein / Expressed protein, function unknown, Rac prophage gi\|238863417, gi... - gi\|238900591\|ref\|YP_002926387.1\| Rac prophage; hypothetical protein [Escherichia coli BW2952], gi\|23... EG12174 - Rac prophage; uncharacterized protein / Expressed protein, function unknown, Rac prophage	89.0	[0..16]	[59..1]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLVPPPGV KGRDKMVHYE VVQYLMDCCG ITYNQAVQAL RSNDWDLWQA EVAIRSNKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.627	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.602	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.572	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.572	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.553	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.553	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.491	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.411	a.144.2	Ribosomal protein L20
View	Download	0.411	a.5.2	UBA-like
View	Download	0.299	a.4.1	Homeodomain-like
View	Download	0.264	a.4.1	Homeodomain-like
View	Download	0.257	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.252	a.4.1	Homeodomain-like
View	Download	0.245	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits