YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7466159
Organism:	Escherichia coli
Length:	59 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7466159.

Description	E-value	Query Range	Subject Range
gi\|13361405, gi\|... - gi\|15831194\|ref\|NP_309967.1\| hypothetical protein ECs1940 [Escherichia coli O157:H7], gi\|13361405\|db... gi\|25499410, gi\|... - pir\|\|F85747 unknown protein encoded within prophage CP-933R [imported] - Escherichia coli (strain O1... gi\|13361405, gi\|... - gi\|15831194\|ref\|NP_309967.1\| hypothetical protein ECs1940 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|12515394, gi\|... - gi\|15801810\|ref\|NP_287828.1\| hypothetical protein Z2402 [Escherichia coli O157:H7 EDL933], gi\|125153... gi\|209918600, gi... - gi\|209918600\|ref\|YP_002292684.1\| hypothetical protein ECSE_1409 [Escherichia coli SE11], gi\|20991185...	116.0	[0..1]	[59..1]
gi\|189367030, gi... - gi\|189404184\|ref\|ZP_03007363.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|169888870, gi... - gi\|170081035\|ref\|YP_001730355.1\| Rac prophage; protein [Escherichia coli str. K-12 substr. DH10B], g... gi\|217317520, gi... - gi\|217329081\|ref\|ZP_03445161.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YDAG_ECOLI - Hypothetical protein ydaG - Escherichia coli gi\|194423935, gi... - gi\|194436952\|ref\|ZP_03069051.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442393... gi\|85674920, gi\|... - gi\|89108204\|ref\|AP_001984.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG12174 - Rac prophage; uncharacterized protein / Expressed protein, function unknown, Rac prophage gi\|238863417, gi... - gi\|238900591\|ref\|YP_002926387.1\| Rac prophage; hypothetical protein [Escherichia coli BW2952], gi\|23... EG12174 - Rac prophage; uncharacterized protein / Expressed protein, function unknown, Rac prophage	89.0	[0..16]	[59..1]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLVPPPGV KGRDKMVHYE VVQYLMDCCG ITYNQAVQAL RSNDWDLWQA EVAIRSNKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits