YRC Public Data Repository - Protein Structure Prediction

Protein:	YNBE_ECOL6
Organism:	Escherichia coli CFT073
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNBE_ECOL6.

Description	E-value	Query Range	Subject Range
gi\|21647733, gi\|... - gi\|21674539\|ref\|NP_662604.1\| hypothetical protein CT1723 [Chlorobium tepidum TLS], gi\|21647733\|gb\|AA...	89.0	[0..1]	[61..41]
gi\|194311837, gi... - gi\|68552843\|ref\|ZP_00592228.1\| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271], ...	86.0	[0..2]	[61..7]
gi\|78166882, gi\|... - gi\|78186980\|ref\|YP_375023.1\| hypothetical protein Plut_1118 [Pelodictyon luteolum DSM 273], gi\|78166...	84.0	[0..5]	[61..9]
gi\|209911917, gi... - gi\|209918658\|ref\|YP_002292742.1\| putative lipoprotein [Escherichia coli SE11], gi\|209911917\|dbj\|BAG7... gi\|218360680, gi... - gi\|218553912\|ref\|YP_002386825.1\| putative lipoprotein [Escherichia coli IAI1], gi\|218360680\|emb\|CAQ9... gi\|192959562, gi... - gi\|75239986\|ref\|ZP_00723947.1\| hypothetical protein EcolE1_01000235 [Escherichia coli E110019], gi\|1... gi\|190904952, gi... - gi\|75231850\|ref\|ZP_00718191.1\| hypothetical protein EcolB7_01000166 [Escherichia coli B7A], gi\|19116... gi\|75190439, gi\|... - gi\|75190439\|ref\|ZP_00703706.1\| hypothetical protein EcolE_01003743 [Escherichia coli E24377A], gi\|15...	84.0	[0..1]	[61..1]
gi\|78171209, gi\|... - gi\|78189010\|ref\|YP_379348.1\| hypothetical protein Cag_1043 [Chlorobium chlorochromatii CaD3], gi\|781...	83.0	[0..1]	[61..7]
gi\|168241202, gi... - gi\|205339375\|gb\|EDZ26139.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|205350667, gi... - gi\|205350667\|gb\|EDZ37298.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|62180210, gi\|... - gi\|62180210\|ref\|YP_216627.1\| putative outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|195633862, gi... - gi\|195633862\|gb\|EDX52214.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|56127686, gi\|... - gi\|56413429\|ref\|YP_150504.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Parat... gi\|205343836, gi... - gi\|205343836\|gb\|EDZ30600.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|167549871, gi... - gi\|205324999\|gb\|EDZ12838.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|167992823, gi... - gi\|205329032\|gb\|EDZ15796.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|205335249, gi... - gi\|205335249\|gb\|EDZ22013.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|168235769, gi... - gi\|197291106\|gb\|EDY30459.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|161363254, gi... - gi\|161613890\|ref\|YP_001587855.1\| hypothetical protein SPAB_01627 [Salmonella enterica subsp. enteric... gi\|16764989, gi\|... - gi\|16764989\|ref\|NP_460604.1\| putative outer membrane lipoprotein [Salmonella typhimurium LT2], gi\|16... gi\|29137619, gi\|... - gi\|29141990\|ref\|NP_805332.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|25512464, gi\|... - gi\|25512464\|pir\|\|AE0664 probable lipoprotein STY1424 [imported] - Salmonella enterica subsp. enteric... gi\|224583864, gi... - gi\|224583864\|ref\|YP_002637662.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|199603311, gi... - gi\|200390866\|ref\|ZP_03217477.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|204323161, gi... - gi\|204927819\|ref\|ZP_03219020.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|205272452, gi... - gi\|205352671\|ref\|YP_002226472.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|206708661, gi... - gi\|207856858\|ref\|YP_002243509.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|197248089, gi... - gi\|197248089\|ref\|YP_002146387.1\| hypothetical protein SeAg_B1511 [Salmonella enterica subsp. enteric... gi\|197264232, gi... - gi\|197264232\|ref\|ZP_03164306.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197362352, gi... - gi\|197362352\|ref\|YP_002141989.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|197940600, gi... - gi\|198246084\|ref\|YP_002215503.1\| hypothetical protein SeD_A1694 [Salmonella enterica subsp. enterica... gi\|194442978, gi... - gi\|194442978\|ref\|YP_002040893.1\| hypothetical protein SNSL254_A1762 [Salmonella enterica subsp. ente... gi\|194406937, gi... - gi\|194448633\|ref\|YP_002045685.1\| hypothetical protein SeHA_C1825 [Salmonella enterica subsp. enteric... gi\|194457023, gi... - gi\|194470659\|ref\|ZP_03076643.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|194713260, gi... - gi\|194737758\|ref\|YP_002114671.1\| hypothetical protein SeSA_A1765 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=ynbE] [protein=putative outer membrane lipoprotein] [protein_id=YP_005237556.1] [location=comp... gi\|16760242 - gi\|16760242\|ref\|NP_455859.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi...	83.0	[0..1]	[61..3]
gi\|209771270, gi... - pir\|\|F85739 hypothetical protein ynbE [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15801746, gi\|... - gi\|15801746\|ref\|NP_287764.1\| hypothetical protein Z2327 [Escherichia coli O157:H7 EDL933], gi\|125153... gi\|13361470, gi\|... - gi\|15831258\|ref\|NP_310031.1\| hypothetical protein ECs2004 [Escherichia coli O157:H7], gi\|13361470\|db... gi\|82776747, gi\|... - gi\|82776747\|ref\|YP_403096.1\| hypothetical protein SDY_1466 [Shigella dysenteriae Sd197], gi\|81240895... gi\|208816052, gi... - gi\|208816052\|ref\|ZP_03257231.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|13361470, gi\|... - gi\|15831258\|ref\|NP_310031.1\| hypothetical protein ECs2004 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208724339, gi... - gi\|208810833\|ref\|ZP_03252666.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|195938019 - gi\|195938019\|ref\|ZP_03083401.1\| hypothetical protein EscherichcoliO157_16567 [Escherichia coli O157:... gi\|168799669, gi... - gi\|189377904\|gb\|EDU96320.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168799669... gi\|254592346, gi... - gi\|254792946\|ref\|YP_003077783.1\| lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|254592346\|g... gi\|217329426, gi... - gi\|217329426\|ref\|ZP_03445506.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|209161869, gi... - gi\|209400469\|ref\|YP_002270412.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208741085, gi... - gi\|208820962\|ref\|ZP_03261282.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|189366669, gi... - gi\|189366669\|gb\|EDU85085.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876311... gi\|168756040, gi... - gi\|189356833\|gb\|EDU75252.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875604... gi\|188016552, gi... - gi\|188016552\|gb\|EDU54674.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16874900... gi\|168788316, gi... - gi\|189371847\|gb\|EDU90263.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168788316... gi\|168782889, gi... - gi\|188999725\|gb\|EDU68711.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878288... gi\|187769332, gi... - gi\|187769332\|gb\|EDU33176.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877518... gi\|189361594, gi... - gi\|189361594\|gb\|EDU80013.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876944...	83.0	[0..1]	[61..1]
gi\|187428537, gi... - gi\|75178652\|ref\|ZP_00698698.1\| hypothetical protein SboyB_01001581 [Shigella boydii BS512], gi\|18773... gi\|82544170, gi\|... - gi\|82544170\|ref\|YP_408117.1\| hypothetical protein SBO_1684 [Shigella boydii Sb227], gi\|81245581\|gb\|A...	83.0	[0..1]	[61..1]
gi\|120554833, gi... - gi\|77952073\|ref\|ZP_00816491.1\| possible outer membrane lipoprotein [Marinobacter aquaeolei VT8], gi\|...	83.0	[0..5]	[61..16]
gi\|67937353, gi\|... - gi\|67937353\|ref\|ZP_00530316.1\| conserved hypothetical protein [Chlorobium phaeobacteroides DSM 266],...	83.0	[0..5]	[61..34]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILLAALTS SFMLVGCTPR IEVAAPKEPI TINMNVKIEH EIIIKADKDV EELLETRSDL  60
   61 F

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.561	c.47.1	Thioredoxin-like
View	Download	0.547	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.542	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.512	c.47.1	Thioredoxin-like
View	Download	0.426	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits