YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7465922, gi\|6...
Organism:	Escherichia coli
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7465922, gi|6....

Description	E-value	Query Range	Subject Range
gi\|74313897, gi\|... - gi\|74313897\|ref\|YP_312316.1\| hypothetical protein SSON_3523 [Shigella sonnei Ss046], gi\|73857374\|gb\|...	287.0	[0..1]	[147..1]
gi\|26249986, gi\|... - gi\|26249986\|ref\|NP_756026.1\| hypothetical protein c4162 [Escherichia coli CFT073], gi\|26110415\|gb\|AA...	283.0	[0..1]	[147..1]
gi\|25339814, gi\|... - pir\|\|H86003 hypothetical protein yrfA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518015, gi\|... - gi\|15803895\|ref\|NP_289931.1\| hypothetical protein Z4746 [Escherichia coli O157:H7 EDL933], gi\|125180... gi\|13363708 - gi\|13363708\|dbj\|BAB37657.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13363708 - gi\|13363708\|dbj\|BAB37657.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai]	283.0	[0..1]	[147..1]
gi\|237703119, gi... - gi\|237703119\|ref\|ZP_04533600.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91074438, gi\|... - gi\|91212864\|ref\|YP_542850.1\| hypothetical protein UTI89_C3890 [Escherichia coli UTI89], gi\|91074438\|...	282.0	[0..1]	[147..1]
gi\|251786645, gi... - gi\|251786645\|ref\|YP_003000949.1\| hypothetical protein B21_03196 [Escherichia coli BL21], gi\|24237891... gi\|254163320, gi... - gi\|254163320\|ref\|YP_003046428.1\| hypothetical protein ECB_03244 [Escherichia coli B str. REL606], gi... gi\|254290070, gi... - gi\|254290070\|ref\|YP_003055818.1\| hypothetical protein ECD_03244 [Escherichia coli BL21(DE3)], gi\|253... gi\|218555937, gi... - gi\|218555937\|ref\|YP_002388850.1\| hypothetical protein ECIAI1_3530 [Escherichia coli IAI1], gi\|218362... gi\|194425122, gi... - gi\|83588743\|ref\|ZP_00927367.1\| hypothetical protein Ecol1_01000376 [Escherichia coli 101-1], gi\|1944...	261.0	[0..14]	[147..1]
gi\|85676649, gi\|... - gi\|89110618\|ref\|AP_004398.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|238902483, gi... - gi\|238902483\|ref\|YP_002928279.1\| hypothetical protein BWG_3083 [Escherichia coli BW2952], gi\|2388629... gi\|188487747, gi... - gi\|75516140\|ref\|ZP_00738258.1\| hypothetical protein Ecol5_01000200 [Escherichia coli 53638], gi\|1884... gi\|193068856, gi... - gi\|75236993\|ref\|ZP_00721049.1\| hypothetical protein EcolE1_01001824 [Escherichia coli E110019], gi\|1... gi\|189374315, gi... - gi\|189374315\|gb\|EDU92731.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... EG12922 - DNA catabolic protein / Required for the utilization of DNA as a carbon source; H. influenzae compet... gi\|170082909, gi... - gi\|170082909\|ref\|YP_001732229.1\| hypothetical protein ECDH10B_3567 [Escherichia coli str. K-12 subst... gi\|191167899, gi... - gi\|75228954\|ref\|ZP_00715546.1\| hypothetical protein EcolB7_01002791 [Escherichia coli B7A], gi\|19116... gi\|157157124, gi... - gi\|75188166\|ref\|ZP_00701433.1\| hypothetical protein EcolE_01001410 [Escherichia coli E24377A], gi\|15... gi\|218697072, gi... - gi\|218697072\|ref\|YP_002404739.1\| hypothetical protein EC55989_3797 [Escherichia coli 55989], gi\|2183... gi\|187732607, gi... - gi\|75179990\|ref\|ZP_00699977.1\| hypothetical protein SboyB_01000318 [Shigella boydii BS512], gi\|18773... EG12922 - DNA catabolic protein / Required for the utilization of DNA as a carbon source; H. influenzae compet... YRFA_ECOLI - Hypothetical protein yrfA - Escherichia coli	259.0	[0..14]	[147..1]
gi\|75260319, gi\|... - gi\|75260319\|ref\|ZP_00731587.1\| hypothetical protein EcolE2_01000207 [Escherichia coli E22], gi\|19306...	259.0	[0..14]	[147..1]
gi\|124500872, gi... - gi\|124528217\|ref\|ZP_01699550.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500872\|gb... gi\|75197323 - gi\|75197323\|ref\|ZP_00707393.1\| hypothetical protein EcolH_01003139 [Escherichia coli HS] gi\|170018372, gi... - gi\|170018372\|ref\|YP_001723326.1\| hypothetical protein EcolC_0321 [Escherichia coli ATCC 8739], gi\|16...	259.0	[0..14]	[147..1]
gi\|190908216, gi... - gi\|75241518\|ref\|ZP_00725363.1\| hypothetical protein EcolF_01001524 [Escherichia coli F11], gi\|191171... gi\|110643625, gi... - gi\|110643625\|ref\|YP_671355.1\| hypothetical protein ECP_3478 [Escherichia coli 536], gi\|110345217\|gb\|... gi\|218429232, gi... - gi\|218691668\|ref\|YP_002399880.1\| hypothetical protein ECED1_4050 [Escherichia coli ED1a], gi\|2184292... gi\|218367218, gi... - gi\|218560449\|ref\|YP_002393362.1\| hypothetical protein ECS88_3777 [Escherichia coli S88], gi\|21836721...	257.0	[0..14]	[147..1]
gi\|189364559, gi... - gi\|189364559\|gb\|EDU82978.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189369520, gi... - gi\|189369520\|gb\|EDU87936.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189359074, gi... - gi\|189359074\|gb\|EDU77493.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|38704164 - gi\|38704164\|ref\|NP_312261.2\| hypothetical protein ECs4234 [Escherichia coli O157:H7 str. Sakai] gi\|168747134, gi... - gi\|188018412\|gb\|EDU56534.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|38704164 - gi\|38704164\|ref\|NP_312261.2\| hypothetical protein ECs4234 [Escherichia coli O157:H7] gi\|217320500, gi... - gi\|217324279\|ref\|ZP_03440363.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|254594706, gi... - gi\|254795306\|ref\|YP_003080143.1\| hypothetical protein ECSP_4341 [Escherichia coli O157:H7 str. TW143... gi\|209396224, gi... - gi\|209396224\|ref\|YP_002272826.1\| hypothetical protein ECH74115_4696 [Escherichia coli O157:H7 str. E... gi\|208819069, gi... - gi\|208819069\|ref\|ZP_03259389.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208812371, gi... - gi\|208812371\|ref\|ZP_03253700.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208726251, gi... - gi\|208806450\|ref\|ZP_03248787.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195934880 - gi\|195934880\|ref\|ZP_03080262.1\| hypothetical protein EscherichcoliO157_00220 [Escherichia coli O157:... gi\|189380100, gi... - gi\|189380100\|gb\|EDU98516.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168779472, gi... - gi\|189002246\|gb\|EDU71232.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168772720, gi... - gi\|187771669\|gb\|EDU35513.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g...	256.0	[0..14]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIFCSRYNW RRRMRVKRWL LAGIALCLLT GMRDPFKPPE DLCRISELSQ WRYQGMVGRG  60
   61 ERIIGVIKDG QKKWRRVQQN DVLENGWTIL QLTPDVLTLG TGTNCEPPQW LWQRQGDTNE 120
  121 AMDSRTTVDA DTRRTGGKAA KSDADGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits