YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12725019, gi\|...
Organism:	Lactococcus lactis subsp. lactis Il1403
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12725019, gi|....

Description	E-value	Query Range	Subject Range
gi\|70607543, gi\|... - gi\|70607543\|ref\|YP_256413.1\| carboxymuconolactone decarboxylase [Sulfolobus acidocaldarius DSM 639],...	146.0	[0..3]	[122..6]
gi\|82748844, gi\|... - gi\|82748844\|ref\|ZP_00911319.1\| 4-carboxymuconolactone decarboxylase [Clostridium beijerincki NCIMB 8...	146.0	[0..2]	[118..3]
gi\|24345456, gi\|... - gi\|24371683\|ref\|NP_715725.1\| carboxymuconolactone decarboxylase family protein [Shewanella oneidensi... SO0083 - carboxymuconolactone decarboxylase family protein	146.0	[0..3]	[122..5]
gi\|113968434, gi... - gi\|82495816\|ref\|ZP_00881389.1\| carboxymuconolactone decarboxylase family protein [Shewanella sp. MR-...	146.0	[0..3]	[121..5]
gi\|95109365 - gi\|95109365\|emb\|CAK14065.1\| gamma-carboxymuconolactone decarboxylase (CMD) [Pseudomonas entomophila ... gi\|104780378, gi... - gi\|95109365\|emb\|CAK14065.1\| gamma-carboxymuconolactone decarboxylase (CMD) [Pseudomonas entomophila ...	145.0	[0..3]	[120..6]
DC4C_ACIAD - 4-carboxymuconolactone decarboxylase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=p...	145.0	[0..3]	[120..6]
gi\|23468817, gi\|... - gi\|66045366\|ref\|YP_235207.1\| carboxymuconolactone decarboxylase [Pseudomonas syringae pv. syringae B...	145.0	[0..2]	[121..5]
gi\|24982843, gi\|... - gi\|26988115\|ref\|NP_743540.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas putida KT2440], gi\|24... tr\|E4RHI8\|E4RHI8... - PcaC OS=Pseudomonas putida (strain BIRD-1) GN=pcaC PE=4 SV=1	145.0	[0..1]	[120..1]
gi\|116696224, gi... - gi\|116696224\|ref\|YP_841800.1\| 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxyla...	145.0	[0..3]	[120..269]
gi\|71554175, gi\|... - gi\|71733622\|ref\|YP_274319.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. phaseoli...	144.0	[0..2]	[121..5]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKEIGLKN LAKIDGAAAE VVFDSLKDLA PDLNNLMLKF AFGTIYERGV LNFKDRELIT  60
   61 ITSLLTQGGC ENQLRVHIQA SLNVGLTQEE IIETFIHYAP YVGFPRVLNA IFVAKEIFTD 120
  121 RK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	2af7A
Description:	Crystal structure of the gamma-carboxymuconolactone decarboxylase from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium target TT747.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-carboxymuconolactone decarboxylase activity	2.79801226397748	bayes_pls_golite062009
catalytic activity	1.59852263091408	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: