YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55715983
Organism:	Xenopus laevis
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55715983.

Description	E-value	Query Range	Subject Range
RL13A_BOVIN - 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3	275.0	[0..1]	[203..1]
gi\|115389400, gi... - gi\|115389400\|ref\|XP_001212205.1\| serine palmitoyltransferase 2 [Aspergillus terreus NIH2624], gi\|114...	273.0	[0..4]	[201..696]
gi\|77404207, gi\|... - gi\|77404207\|ref\|NP_775462.2\| ribosomal protein L13A [Rattus norvegicus], gi\|55778547\|gb\|AAH86382.1\| ...	273.0	[0..1]	[203..1]
gi\|190689373, gi... - gi\|190690735\|gb\|ACE87142.1\| ribosomal protein L13a protein [synthetic construct], gi\|190689373\|gb\|AC... RPL13A - ribosomal protein L13a gi\|114678455, gi... - gi\|55628330\|ref\|XP_527683.1\| PREDICTED: similar to ribosomal protein L13a; 60S ribosomal protein L13...	272.0	[0..1]	[203..1]
RL13A_MACFA - 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3	271.0	[0..1]	[203..1]
gi\|55050, gi\|111208 - gi\|55050\|emb\|CAA35908.1\| tum- transplantation antigen P198 [Mus musculus], pir\|\|JL0149 transplantati...	271.0	[0..1]	[203..1]
gi\|55644083, gi\|... - gi\|55644083\|ref\|XP_511050.1\| PREDICTED: similar to 23 kD highly basic protein isoform 5 [Pan troglod...	271.0	[0..1]	[203..1]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGQVLVLD GRGHLLGRLA AIVAKQVLLG RKVVVVRCEG INISGNFYRN KLKYLAFLRK  60
   61 RMNTNPSRGP YHFRAPSRIF WRTVRGMLPH KTKRGQAALE RLKVLDGIPP PYDKKKRMVV 120
  121 PAALKVVRLK PTRKFAYLGR LAHEVGWKYQ AVTATLEEKR KEKAKMHYRK KKQILRLRKQ 180
  181 AEKNVEKKIC KFTEVLKTNG LLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	1s1iM
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits