YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38234451
Organism:	Corynebacterium diphtheriae NCTC 13129
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38234451.

Description	E-value	Query Range	Subject Range
gi\|34396741, gi\|... - gi\|34540428\|ref\|NP_904907.1\| hypothetical protein PG0622 [Porphyromonas gingivalis W83], gi\|34396741...	133.0	[0..10]	[150..5]
MAUE_METFL - (Q50414) Methylamine utilization protein mauE MAUE_METFK - Methylamine utilization protein MauE OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 68...	131.0	[0..11]	[144..11]
gi\|78195467, gi\|... - gi\|78224212\|ref\|YP_385959.1\| methylamine utilization protein MauE, putative [Geobacter metallireduce...	129.0	[0..10]	[144..8]
gi\|39982376, gi\|... - gi\|39995613\|ref\|NP_951564.1\| methylamine utilization protein MauE, putative [Geobacter sulfurreducen...	120.0	[0..10]	[141..8]
gi\|72161571, gi\|... - gi\|72161571\|ref\|YP_289228.1\| hypothetical protein Tfu_1167 [Thermobifida fusca YX], gi\|71915303\|gb\|A... gi\|48834537 - ref\|ZP_00291546.1\| hypothetical protein Tfus02003008 [Thermobifida fusca]	117.0	[0..10]	[148..39]
gi\|71670538, gi\|... - gi\|71676293\|ref\|ZP_00674035.1\| hypothetical protein TeryDRAFT_1928 [Trichodesmium erythraeum IMS101]...	110.0	[0..6]	[118..1]
gi\|53715241, gi\|... - gi\|53715241\|ref\|YP_101233.1\| hypothetical protein BF3957 [Bacteroides fragilis YCH46], gi\|52218106\|d...	109.0	[0..3]	[144..6]
MAUE_METME - Methylamine utilization protein MauE OS=Methylophilus methylotrophus GN=mauE PE=4 SV=1	108.0	[0..10]	[145..10]
gi\|86566489, gi\|... - gi\|86739627\|ref\|YP_480027.1\| DoxX [Frankia sp. CcI3], gi\|86566489\|gb\|ABD10298.1\| DoxX [Frankia sp. C...	107.0	[0..10]	[142..19]
gi\|78218257, gi\|... - gi\|78355852\|ref\|YP_387301.1\| hypothetical protein Dde_0805 [Desulfovibrio desulfuricans subsp. desul...	105.0	[0..13]	[141..13]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLHLVLDCI SAFARFFMAY IWLAAGISKL NNRMETAQSI RAYEIFTDTW SNGLASVIGP  60
   61 LEIAGGVLLL FGIFLRKASW ISVTVLVLFI AGIAQAWARN LGIDCGCFGP QGLGENTARD 120
  121 YALIILRDIF FIALSLWTVY RPYKKFALYA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits