YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16759536
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16759536.

Description	E-value	Query Range	Subject Range
gi\|205331004, gi... - gi\|205331004\|gb\|EDZ17768.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ... gi\|16763946, gi\|... - gi\|16763946\|ref\|NP_459561.1\| hypothetical protein STM0569 [Salmonella typhimurium LT2], gi\|16419078\|... gi\|194456287, gi... - gi\|194469923\|ref\|ZP_03075907.1\| transporter, small conductance mechanosensitive ion channel [Salmone... gi\|197261686, gi... - gi\|197261686\|ref\|ZP_03161760.1\| transporter, small conductance mechanosensitive ion channel [Salmone... gi\|168818816, gi... - gi\|205344186\|gb\|EDZ30950.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ... gi\|194410148, gi... - gi\|194451844\|ref\|YP_002044600.1\| transporter, small conductance mechanosensitive ion channel [Salmon... lcl\|NC_016856.1_... - [gene=ybdG] [protein=hypothetical protein] [protein_id=YP_005236272.1] [location=complement(626329..... gi\|168231569, gi... - gi\|205334081\|gb\|EDZ20845.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ... gi\|168240405, gi... - gi\|205340174\|gb\|EDZ26938.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ...	2.0E-92	[1..415]	[1..415]
gi\|62126809, gi\|... - gi\|62179176\|ref\|YP_215593.1\| hypothetical protein SC0606 [Salmonella enterica subsp. enterica serova... gi\|224582408, gi... - gi\|224582408\|ref\|YP_002636206.1\| hypothetical protein SPC_0587 [Salmonella enterica subsp. enterica ... gi\|199601954, gi... - gi\|200389509\|ref\|ZP_03216120.1\| transporter, small conductance mechanosensitive ion channel [Salmone... gi\|194403341, gi... - gi\|194444678\|ref\|YP_002039809.1\| transporter, small conductance mechanosensitive ion channel [Salmon... gi\|205324166, gi... - gi\|205324166\|gb\|EDZ12005.1\| transporter, small conductance mechanosensitive ion channel [Salmonella ...	1.0E-91	[1..415]	[1..415]
gi\|83586989, gi\|... - gi\|83586989\|ref\|ZP_00925619.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|253976748, gi... - gi\|254287441\|ref\|YP_003053189.1\| predicted mechanosensitive channel [Escherichia coli BL21(DE3)], gi... gi\|253972554, gi... - gi\|254160653\|ref\|YP_003043761.1\| predicted mechanosensitive channel [Escherichia coli B str. REL606]...	5.0E-90	[1..415]	[1..415]
YBDG_SHIFL - Miniconductance mechanosensitive channel YbdG OS=Shigella flexneri GN=ybdG PE=3 SV=1 gi\|30062031, gi\|... - gi\|30062031\|ref\|NP_836202.1\| putative transport protein [Shigella flexneri 2a str. 2457T], gi\|300402... gi\|238862645, gi... - gi\|238899854\|ref\|YP_002925650.1\| putative mechanosensitive channel [Escherichia coli BW2952], gi\|238... YBDG_ECOLI - Hypothetical protein ybdG - Escherichia coli EG12620 - mechanosensitive channel protein, miniconductance / Mechanosensitive channel protein, MscM-like; hep... gi\|169887991, gi... - gi\|170080257\|ref\|YP_001729577.1\| mechanosensitive channel [Escherichia coli str. K-12 substr. DH10B]... gi\|169755994, gi... - gi\|170021066\|ref\|YP_001726020.1\| MscS mechanosensitive ion channel [Escherichia coli ATCC 8739], gi\|... gi\|124529362, gi... - gi\|124529362\|ref\|ZP_01700396.1\| MscS Mechanosensitive ion channel [Escherichia coli B], gi\|124499962... gi\|218703909, gi... - gi\|218703909\|ref\|YP_002411428.1\| putative membrane protein; putative channel [Escherichia coli UMN02... EG12620 - mechanosensitive channel protein, miniconductance / Mechanosensitive channel protein, MscM-like; hep... gi\|215263691, gi... - gi\|215485619\|ref\|YP_002328050.1\| predicted mechanosensitive channel [Escherichia coli O127:H6 str. E... gi\|75194760, gi\|... - gi\|75194760\|ref\|ZP_00704830.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|75514669, gi\|... - gi\|75514669\|ref\|ZP_00736924.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|194419181, gi... - gi\|83570410\|ref\|ZP_00921855.1\| COG0668: Small-conductance mechanosensitive channel [Shigella dysente... gi\|73854590, gi\|... - gi\|74311113\|ref\|YP_309532.1\| putative transport [Shigella sonnei Ss046], gi\|73854590\|gb\|AAZ87297.1\| ... gi\|4062206, gi\|8... - gi\|89107442\|ref\|AP_001222.1\| predicted mechanosensitive channel [Escherichia coli str. K-12 substr. ... gi\|56383231, gi\|... - gi\|56479680\|ref\|NP_706427.2\| putative transport protein [Shigella flexneri 2a str. 301], gi\|56383231... gi\|110804561, gi... - gi\|110804561\|ref\|YP_688081.1\| putative transport protein [Shigella flexneri 5 str. 8401], gi\|1106141...	7.0E-90	[1..415]	[1..415]
gi\|115511924, gi... - gi\|117622800\|ref\|YP_851713.1\| hypothetical protein APECO1_1471 [Escherichia coli APEC O1], gi\|115511... gi\|218557517, gi... - gi\|218557517\|ref\|YP_002390430.1\| putative membrane protein; putative channel [Escherichia coli S88],... gi\|110640807, gi... - gi\|110640807\|ref\|YP_668535.1\| transporter [Escherichia coli 536], gi\|110342399\|gb\|ABG68636.1\| putati... gi\|26106954, gi\|... - gi\|26246555\|ref\|NP_752594.1\| hypothetical protein c0663 [Escherichia coli CFT073], gi\|26106954\|gb\|AA... gi\|91071196, gi\|... - gi\|91209622\|ref\|YP_539608.1\| hypothetical protein UTI89_C0577 [Escherichia coli UTI89], gi\|91071196\|... gi\|227838531, gi... - gi\|227884445\|ref\|ZP_04002250.1\| small conductance mechanosensitive ion channel (MscS) family protein... gi\|237707453, gi... - gi\|237707453\|ref\|ZP_04537934.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|190907408, gi... - gi\|75240734\|ref\|ZP_00724641.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli...	8.0E-90	[1..415]	[1..415]
gi\|82775839, gi\|... - gi\|82775839\|ref\|YP_402186.1\| putative transport [Shigella dysenteriae Sd197], gi\|81239987\|gb\|ABB6069...	8.0E-90	[1..415]	[1..415]
gi\|13360073, gi\|... - gi\|15829869\|ref\|NP_308642.1\| putative transport [Escherichia coli O157:H7], gi\|13360073\|dbj\|BAB34038... gi\|25389859, gi\|... - pir\|\|B85556 probable transport ybdG [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|12513462, gi\|... - gi\|15800290\|ref\|NP_286302.1\| putative transport [Escherichia coli O157:H7 EDL933], gi\|12513462\|gb\|AA... gi\|209160366, gi... - gi\|209398966\|ref\|YP_002269208.1\| transporter, small conductance mechanosensitive ion channel (MscS) ... gi\|217321933, gi... - gi\|217325712\|ref\|ZP_03441796.1\| transporter, small conductance mechanosensitive ion channel (MscS) f... gi\|13360073, gi\|... - gi\|15829869\|ref\|NP_308642.1\| putative transport [Escherichia coli O157:H7 str. Sakai], gi\|13360073\|d... gi\|195936122 - gi\|195936122\|ref\|ZP_03081504.1\| putative transport [Escherichia coli O157:H7 str. EC4024] gi\|208807206, gi... - gi\|208807206\|ref\|ZP_03249543.1\| transporter, small conductance mechanosensitive ion channel (MscS) f... gi\|208814809, gi... - gi\|208814809\|ref\|ZP_03255988.1\| transporter, small conductance mechanosensitive ion channel (MscS) f... gi\|208823002, gi... - gi\|208823002\|ref\|ZP_03263320.1\| transporter, small conductance mechanosensitive ion channel (MscS) f... gi\|168770172, gi... - gi\|189360898\|gb\|EDU79317.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|168774631, gi... - gi\|187769715\|gb\|EDU33559.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|189373697, gi... - gi\|189373697\|gb\|EDU92113.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|189379255, gi... - gi\|189379255\|gb\|EDU97671.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|168754669, gi... - gi\|189358075\|gb\|EDU76494.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|189369034, gi... - gi\|189369034\|gb\|EDU87450.1\| transporter, small conductance mechanosensitive ion channel (MscS) famil... gi\|254791742, gi... - gi\|254791742\|ref\|YP_003076579.1\| predicted mechanosensitive channel [Escherichia coli O157:H7 str. T...	1.0E-89	[1..415]	[1..415]
gi\|75258688, gi\|... - gi\|75258688\|ref\|ZP_00730095.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|190900639, gi... - gi\|75227372\|ref\|ZP_00714150.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|75210796, gi\|... - gi\|75210796\|ref\|ZP_00710928.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|75189615, gi\|... - gi\|75189615\|ref\|ZP_00702882.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli... gi\|209911091, gi... - gi\|209917832\|ref\|YP_002291916.1\| putative transport protein [Escherichia coli SE11], gi\|209911091\|db... gi\|218359886, gi... - gi\|218553118\|ref\|YP_002386031.1\| putative membrane protein; putative channel [Escherichia coli IAI1]... gi\|218694017, gi... - gi\|218694017\|ref\|YP_002401684.1\| putative membrane protein; putative channel [Escherichia coli 55989...	2.0E-89	[1..415]	[1..415]
gi\|81244434, gi\|... - gi\|82543023\|ref\|YP_406970.1\| putative transport [Shigella boydii Sb227], gi\|81244434\|gb\|ABB65142.1\| ...	4.0E-89	[1..415]	[1..415]
gi\|75236558, gi\|... - gi\|75236558\|ref\|ZP_00720646.1\| COG0668: Small-conductance mechanosensitive channel [Escherichia coli...	1.0E-88	[1..415]	[1..415]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELISQVED LAGIEMNHTT SLVVIFGIIF LTAVVVHIIL HWIVLRAFEK RASASSRLWL  60
   61 QIITQNKLFH RLAFTLQGII VNIQAALWL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKGSEAADIL TTCAQLWIMT YALLSLFSLL DVIFNLSQKW PAASQLPLKG IFQGIKLIGA  60
   61 IIVGILMISL LIGQSPAILI SGLGAMAAVL MLVFKDPILG LVAGIQLSAN DMLKLGDWLE 120
  121 MPKYGADGAV IDIGLTTVKV RNWDNTITTI PTWSLVSDSF KNWSGMSASG GRRIKRSINI 180
  181 DATSIHFLDD DEKQRLLTAQ LLKPYLTSRH QEIDEWNKQL DAPESALNHR RMTNIGTFRA 240
  241 YLNEYLRHHP RIRKDMTLMV RQLAPDDHGL PIEIYAFTNT VVWLEYESIQ ADIFDHIFAV 300
  301 VEEFGLRIHQ TPTGSDIRAL SGTLRH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	2oauA
Description:	No description for 2oauA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.35978536608048	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: