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View Structure Prediction Details

Protein: gi|16501973, gi|...
Organism: Salmonella enterica subsp. enterica serovar Typhi
Length: 379 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16501973, gi|....

Description E-value Query
Range
Subject
Range
gi|62179315, gi|... - gi|62179315|ref|YP_215732.1| cytochrome d terminal oxidase polypeptide subunit II [Salmonella enteri...
0.0 [1..379] [1..379]
gi|157158603, gi... - gi|75189755|ref|ZP_00703022.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
0.0 [1..379] [1..379]
EG10174 - cytochrome d terminal oxidase, subunit II / Cytochrome d (bd-I) ubiquinol oxidase subunit 2; upregul...
gi|227838721, gi... - gi|227884300|ref|ZP_04002105.1| cytochrome d ubiquinol oxidase subunit II [Escherichia coli 83972], ...
gi|226898514, gi... - gi|237707304|ref|ZP_04537785.1| cytochrome d terminal oxidase polypeptide subunit II [Escherichia sp...
gi|238899998, gi... - gi|238899998|ref|YP_002925794.1| cytochrome d terminal oxidase, subunit II [Escherichia coli BW2952]...
gi|242376495, gi... - gi|251784222|ref|YP_002998526.1| hypothetical protein B21_00682 [Escherichia coli BL21], gi|24237649...
gi|254287591, gi... - gi|254287591|ref|YP_003053339.1| cytochrome d terminal oxidase, subunit II [Escherichia coli BL21(DE...
gi|254160803, gi... - gi|254160803|ref|YP_003043911.1| cytochrome d terminal oxidase, subunit II [Escherichia coli B str. ...
gi|254591291, gi... - gi|254791891|ref|YP_003076728.1| cytochrome d terminal oxidase, subunit II [Escherichia coli O157:H7...
CYDB_ECOLI - Cytochrome d ubiquinol oxidase subunit 2 (EC 1.10.3.-) (Cytochrome d ubiquinol oxidase subunit II) (...
gi|124501505, gi... - gi|124526811|ref|ZP_01698693.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli B], gi|...
gi|218704061, gi... - gi|218704061|ref|YP_002411580.1| cytochrome d terminal oxidase, subunit II [Escherichia coli UMN026]...
gi|218699106, gi... - gi|218699106|ref|YP_002406735.1| cytochrome d terminal oxidase, subunit II [Escherichia coli IAI39],...
CYDB_ECOL6 - Cytochrome bd-I ubiquinol oxidase subunit 2 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /...
CYDB_ECO57 - Cytochrome bd-I ubiquinol oxidase subunit 2 OS=Escherichia coli O157:H7 GN=cydB PE=3 SV=1
EG10174 - cytochrome d terminal oxidase, subunit II / Cytochrome d (bd-I) ubiquinol oxidase subunit 2; upregul...
gi|15800450, gi|... - gi|15800450|ref|NP_286462.1| cytochrome d terminal oxidase polypeptide subunit II [Escherichia coli ...
gi|215263827, gi... - gi|215485755|ref|YP_002328186.1| cytochrome d terminal oxidase, subunit II [Escherichia coli O127:H6...
gi|209911244, gi... - gi|209917985|ref|YP_002292069.1| cytochrome d ubiquinol oxidase subunit II [Escherichia coli SE11], ...
gi|73854735, gi|... - gi|74311258|ref|YP_309677.1| cytochrome d terminal oxidase polypeptide subunit II [Shigella sonnei S...
gi|218549693, gi... - gi|218549693|ref|YP_002383484.1| cytochrome d terminal oxidase, subunit II [Escherichia fergusonii A...
gi|188494157, gi... - gi|75511621|ref|ZP_00734272.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
gi|217322792, gi... - gi|217326571|ref|ZP_03442655.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
gi|218364416, gi... - gi|218557647|ref|YP_002390560.1| cytochrome d terminal oxidase, subunit II [Escherichia coli S88], g...
gi|218553261, gi... - gi|218553261|ref|YP_002386174.1| cytochrome d terminal oxidase, subunit II [Escherichia coli IAI1], ...
gi|218350890, gi... - gi|218694158|ref|YP_002401825.1| cytochrome d terminal oxidase, subunit II [Escherichia coli 55989],...
gi|218688525, gi... - gi|218688525|ref|YP_002396737.1| cytochrome d terminal oxidase, subunit II [Escherichia coli ED1a], ...
gi|157160216, gi... - gi|75194894|ref|ZP_00704964.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
gi|1651328, gi|8... - gi|89107591|ref|AP_001371.1| cytochrome d terminal oxidase, subunit II [Escherichia coli str. K-12 s...
gi|75175933, gi|... - gi|75175933|ref|ZP_00696120.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Shigella boydi...
gi|91209767, gi|... - gi|91209767|ref|YP_539753.1| cytochrome d terminal oxidase polypeptide subunit II [Escherichia coli ...
gi|194439246, gi... - gi|83585335|ref|ZP_00923982.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
gi|13360228, gi|... - gi|15830023|ref|NP_308796.1| cytochrome d terminal oxidase polypeptide subunit II [Escherichia coli ...
gi|110342533, gi... - gi|110640941|ref|YP_668669.1| cytochrome D ubiquinol oxidase subunit II [Escherichia coli 536], gi|1...
gi|192926844, gi... - gi|75256444|ref|ZP_00728102.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
gi|190905679, gi... - gi|75237350|ref|ZP_00721392.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
gi|191167219, gi... - gi|75229634|ref|ZP_00716171.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
gi|75209697, gi|... - gi|75209697|ref|ZP_00709905.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Escherichia co...
CYDB_ECOL6 - Cytochrome d ubiquinol oxidase subunit 2 OS=Escherichia coli O6 GN=cydB PE=3 SV=1
gi|189376477, gi... - gi|189406108|ref|ZP_02826353.2| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
gi|189373023, gi... - gi|189404899|ref|ZP_02811906.2| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
gi|195939085 - gi|195939085|ref|ZP_03084467.1| cytochrome d terminal oxidase, subunit II [Escherichia coli O157:H7 ...
gi|194434018, gi... - gi|194434018|ref|ZP_03066289.1| cytochrome d ubiquinol oxidase, subunit II [Shigella dysenteriae 101...
gi|208815105, gi... - gi|208815105|ref|ZP_03256284.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
gi|208728662, gi... - gi|208808861|ref|ZP_03251198.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
gi|209159613, gi... - gi|209398213|ref|YP_002269367.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H...
gi|208737190, gi... - gi|208822997|ref|ZP_03263315.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
gi|169888235, gi... - gi|170080400|ref|YP_001729720.1| cytochrome d terminal oxidase, subunit II [Escherichia coli str. K-...
gi|170020922, gi... - gi|170020922|ref|YP_001725876.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli ATCC 8...
gi|187776421, gi... - gi|187776421|ref|ZP_02992951.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
gi|170518495, gi... - gi|170680777|ref|YP_001742844.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli SMS-3-...
gi|189402926, gi... - gi|189402926|ref|ZP_03006900.1| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
gi|189002960, gi... - gi|189010039|ref|ZP_02804235.2| cytochrome d ubiquinol oxidase, subunit II [Escherichia coli O157:H7...
0.0 [1..379] [1..379]
gi|82776011, gi|... - gi|82776011|ref|YP_402358.1| cytochrome d terminal oxidase polypeptide subunit II [Shigella dysenter...
0.0 [1..379] [1..379]
gi|34420278 - gi|34420278|gb|AAQ67423.1| cytochrome d subunit B [Klebsiella oxytoca]
0.0 [1..379] [1..379]
gi|1926319 - gi|1926319|emb|CAA71118.1| subunit II of cytochrome bd [Klebsiella pneumoniae]
0.0 [1..379] [1..379]
gi|167057035, gi... - gi|167424186|ref|ZP_02315939.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar M...
gi|166962393, gi... - gi|167419652|ref|ZP_02311405.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar O...
gi|186697575, gi... - gi|186894549|ref|YP_001871661.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pseudotubercul...
gi|169751719, gi... - gi|170025185|ref|YP_001721690.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pseudotubercul...
Q66D97|Q66D97_YERPS - Cytochrome D ubiquinol oxidase subunit II - Yersinia pseudotuberculosis
gi|149366882, gi... - gi|149366882|ref|ZP_01888916.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis CA88-4125...
gi|108813040, gi... - gi|229903481|ref|ZP_04518594.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis Nepal516]...
gi|162351299, gi... - gi|77636423|ref|ZP_00798497.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Yersinia pesti...
gi|152961444, gi... - gi|77632111|ref|ZP_00794697.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Yersinia pseud...
gi|165924808, gi... - gi|165924808|ref|ZP_02220640.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar O...
gi|166211787, gi... - gi|166211787|ref|ZP_02237822.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar A...
gi|165913696, gi... - gi|89105197|ref|ZP_01177721.1| COG1294: Cytochrome bd-type quinol oxidase, subunit 2 [Yersinia pesti...
gi|166011570, gi... - gi|166011570|ref|ZP_02232468.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar A...
gi|229841054, gi... - gi|229841054|ref|ZP_04461213.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis biovar Or...
gi|229843158, gi... - gi|229843158|ref|ZP_04463304.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis biovar Or...
gi|229703880, gi... - gi|229893995|ref|ZP_04509181.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis Pestoides...
gi|22126938, gi|... - gi|22126938|ref|NP_670361.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis KIM], gi|219...
gi|145599843, gi... - gi|145599843|ref|YP_001163919.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis Pestoide...
gi|25285476 - pir||AF0137 cytochrome D ubiquinol oxidase chain II (EC 1.10.3.-) [imported] - Yersinia pestis (stra...
gi|16121418, gi|... - gi|218928286|ref|YP_002346161.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis CO92], g...
gi|51588778, gi|... - gi|51595496|ref|YP_069687.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pseudotuberculosis ...
0.0 [1..379] [1..379]
gi|167399993, gi... - gi|167399993|ref|ZP_02305511.1| cytochrome d ubiquinol oxidase, subunit II [Yersinia pestis biovar A...
gi|108806593, gi... - gi|108806593|ref|YP_650509.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis Antiqua], g...
0.0 [1..379] [1..379]
gi|45440872, gi|... - gi|45440872|ref|NP_992411.1| cytochrome D ubiquinol oxidase subunit II [Yersinia pestis biovar Micro...
0.0 [1..379] [1..379]
gi|110614188, gi... - gi|110804640|ref|YP_688160.1| cytochrome d terminal oxidase polypeptide subunit II [Shigella flexner...
gi|81244572, gi|... - gi|82543161|ref|YP_407108.1| cytochrome d terminal oxidase polypeptide subunit II [Shigella boydii S...
gi|24111990, gi|... - gi|24111990|ref|NP_706500.1| cytochrome d terminal oxidase polypeptide subunit II [Shigella flexneri...
gi|30062103, gi|... - gi|30062103|ref|NP_836274.1| cytochrome d terminal oxidase polypeptide subunit II [Shigella flexneri...
0.0 [1..379] [1..379]

Back

Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDYEVLRFI WWLLVGILLI GFAVTDGFDM GVGMLTRFLG RNDTERRIMI NSIAPHWDGN  60
   61 QVWLITAGGA LFAAWPMVYA AAFSGFYVAM ILVLASLFFR PVGFDYRSKI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDPRWRNMWD WGVFIGSFVP PLVIGVAFGN LLQGVPFHVD EYLRLYYTGN FFQLLNPFGL  60
   61 LAGIVSVGMI ITQGATYLQM RTVGELHLRA RATSQIAALV TLVCFALAGV WVMYGIDGYV 120
  121 VTSAIDHHAA SNPLTKEVAR EAGAWLVNFN NAPILWLVPA LGVVLPLLTI LTSRMEKGAW 180
  181 AFLFSSLTLA CIILTAGIAM FPFVMPSSTM 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [321-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASLTMWDA TSSQMTLNLM TWVAAVFVPI ILIYTSWCYW KMFGRITKEH IESNTHSLY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle