YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25511775, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	49 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25511775, gi|....

Description	E-value	Query Range	Subject Range
gi\|62126981, gi\|... - gi\|62179348\|ref\|YP_215765.1\| hypothetical protein SC0778 [Salmonella enterica subsp. enterica serova... gi\|207856218, gi... - gi\|207856218\|ref\|YP_002242869.1\| hypothetical protein SEN0725 [Salmonella enterica subsp. enterica s... gi\|205352039, gi... - gi\|205352039\|ref\|YP_002225840.1\| hypothetical protein SG0758 [Salmonella enterica subsp. enterica se... gi\|199603431, gi... - gi\|200390986\|ref\|ZP_03217597.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=STM14_0906] [protein=hypothetical protein] [protein_id=YP_005236500.1] [location=845597..84584...	4.0E-14	[1..49]	[35..83]
ACRZ_ECOL6 - Multidrug efflux pump accessory protein AcrZ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|218694180, gi... - gi\|218694180\|ref\|YP_002401847.1\| hypothetical protein EC55989_0742 [Escherichia coli 55989], gi\|2183... gi\|218688547, gi... - gi\|218688547\|ref\|YP_002396759.1\| hypothetical protein ECED1_0724 [Escherichia coli ED1a], gi\|2184261... gi\|218364437, gi... - gi\|218557668\|ref\|YP_002390581.1\| hypothetical protein ECS88_0778 [Escherichia coli S88], gi\|21836443... gi\|218553282, gi... - gi\|218553282\|ref\|YP_002386195.1\| hypothetical protein ECIAI1_0730 [Escherichia coli IAI1], gi\|218360... gi\|218431180, gi... - gi\|218704083\|ref\|YP_002411602.1\| hypothetical protein ECUMN_0847 [Escherichia coli UMN026], gi\|21843... gi\|218369113, gi... - gi\|218699127\|ref\|YP_002406756.1\| hypothetical protein ECIAI39_0730 [Escherichia coli IAI39], gi\|2183... gi\|208731707, gi... - gi\|208815059\|ref\|ZP_03256238.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208727242, gi... - gi\|208807441\|ref\|ZP_03249778.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195936750 - gi\|195936750\|ref\|ZP_03082132.1\| hypothetical protein EscherichcoliO157_09850 [Escherichia coli O157:... gi\|194439763, gi... - gi\|194439763\|ref\|ZP_03071831.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442131... gi\|217321101, gi... - gi\|217324880\|ref\|ZP_03440964.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|237707282, gi... - gi\|237707282\|ref\|ZP_04537763.1\| predicted protein [Escherichia sp. 3_2_53FAA], gi\|226898492\|gb\|EEH84... gi\|215263849, gi... - gi\|215485777\|ref\|YP_002328208.1\| hypothetical protein E2348C_0639 [Escherichia coli O127:H6 str. E23... gi\|227839029, gi... - gi\|227884277\|ref\|ZP_04002082.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783902... gi\|209400035, gi... - gi\|209400035\|ref\|YP_002269390.1\| hypothetical protein ECH74115_0865 [Escherichia coli O157:H7 str. E... gi\|254160825, gi... - gi\|254160825\|ref\|YP_003043933.1\| hypothetical protein ECB_00715 [Escherichia coli B str. REL606], gi... gi\|208737978, gi... - gi\|208822493\|ref\|ZP_03262812.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|238862958, gi... - gi\|238900020\|ref\|YP_002925816.1\| hypothetical protein BWG_0614 [Escherichia coli BW2952], gi\|2388629... gi\|56383238, gi\|... - gi\|56479687\|ref\|NP_706479.2\| hypothetical protein SF0542 [Shigella flexneri 2a str. 301], gi\|5638323... gi\|254591313, gi... - gi\|254791913\|ref\|YP_003076750.1\| hypothetical protein ECSP_0815 [Escherichia coli O157:H7 str. TW143... gi\|82543182, gi\|... - gi\|82543182\|ref\|YP_407129.1\| hypothetical protein SBO_0617 [Shigella boydii Sb227], gi\|81244593\|gb\|A... gi\|89107613, gi\|... - gi\|89107613\|ref\|AP_001393.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|13360249, gi\|... - gi\|15830044\|ref\|NP_308817.1\| hypothetical protein ECs0790 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110342555, gi... - gi\|110640963\|ref\|YP_668691.1\| putative outer membrane or exported protein [Escherichia coli 536], gi... gi\|74311280, gi\|... - gi\|74311280\|ref\|YP_309699.1\| hypothetical protein SSON_0714 [Shigella sonnei Ss046], gi\|73854757\|gb\|... gi\|81240184, gi\|... - gi\|82776036\|ref\|YP_402383.1\| hypothetical protein SDY_0709 [Shigella dysenteriae Sd197], gi\|81240184... EG14328 - AcrAB-TolC efflux pump accessory protein, membrane-associated / AcrAB-TolC efflux pump accessory pro... YBHT_ECOLI - Hypothetical protein ybhT precursor - Escherichia coli gi\|189363559, gi... - gi\|189363559\|gb\|EDU81978.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189366452, gi... - gi\|189366452\|gb\|EDU84868.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168757051, gi... - gi\|189355860\|gb\|EDU74279.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168750254, gi... - gi\|188015493\|gb\|EDU53615.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|190905535, gi... - gi\|191174190\|ref\|ZP_03035702.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190905535\|... gi\|191168426, gi... - gi\|191168426\|ref\|ZP_03030215.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190901514\|... gi\|188492806, gi... - gi\|188492806\|ref\|ZP_03000076.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848800... gi\|187427422, gi... - gi\|187730430\|ref\|YP_001879412.1\| hypothetical protein SbBS512_E0683 [Shigella boydii CDC 3083-94], g... gi\|194435025, gi... - gi\|194435025\|ref\|ZP_03067265.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|194429698, gi... - gi\|194429698\|ref\|ZP_03062215.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194412257... gi\|193069569, gi... - gi\|193069569\|ref\|ZP_03050522.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|192926759, gi... - gi\|193065574\|ref\|ZP_03046641.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192926759\|... gi\|168800806, gi... - gi\|189376938\|gb\|EDU95354.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168786921, gi... - gi\|189373070\|gb\|EDU91486.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189002697, gi... - gi\|189002697\|gb\|EDU71683.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187768132, gi... - gi\|187768132\|gb\|EDU31976.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|170768927, gi... - gi\|170768927\|ref\|ZP_02903380.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|170683661, gi... - gi\|170683661\|ref\|YP_001742865.1\| hypothetical protein EcSMS35_0785 [Escherichia coli SMS-3-5], gi\|17... gi\|169888256, gi... - gi\|170080421\|ref\|YP_001729741.1\| hypothetical protein ECDH10B_0830 [Escherichia coli str. K-12 subst... gi\|124498300, gi... - gi\|124531879\|ref\|ZP_01701978.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498300\|gb... gi\|169755828, gi... - gi\|170020900\|ref\|YP_001725854.1\| hypothetical protein EcolC_2900 [Escherichia coli ATCC 8739], gi\|16... ACRZ_SHIFL - Multidrug efflux pump accessory protein AcrZ OS=Shigella flexneri GN=acrZ PE=3 SV=1 ACRZ_ECO57 - Multidrug efflux pump accessory protein AcrZ OS=Escherichia coli O157:H7 GN=acrZ PE=3 SV=1 gi\|30062082, gi\|... - gi\|30062082\|ref\|NP_836253.1\| hypothetical protein S0550 [Shigella flexneri 2a str. 2457T], gi\|300403... gi\|12513694, gi\|... - gi\|15800471\|ref\|NP_286483.1\| hypothetical protein Z0932 [Escherichia coli O157:H7 EDL933], gi\|125136... EG14328 - AcrAB-TolC efflux pump accessory protein, membrane-associated / AcrAB-TolC efflux pump accessory pro... gi\|157157941, gi... - gi\|157157941\|ref\|YP_001461916.1\| hypothetical protein EcE24377A_0789 [Escherichia coli E24377A], gi\|... YBHT_ECOL6 - Uncharacterized protein ybhT OS=Escherichia coli O6 GN=ybhT PE=4 SV=1 gi\|157160237, gi... - gi\|157160237\|ref\|YP_001457555.1\| hypothetical protein EcHS_A0816 [Escherichia coli HS], gi\|157065917...	3.0E-11	[1..48]	[1..48]
gi\|4062332 - dbj\|BAA35426.1\| unnamed protein product [Escherichia coli K12] gi\|26107127, gi\|... - gi\|26246728\|ref\|NP_752768.1\| hypothetical protein c0838 [Escherichia coli CFT073], gi\|26107127\|gb\|AA... gi\|24050780, gi\|... - ref\|NP_706479.1\| hypothetical protein SF0542 [Shigella flexneri 2a str. 301], gb\|AAN42186.1\| orf, c... gi\|91209790, gi\|... - gi\|91209790\|ref\|YP_539776.1\| hypothetical protein UTI89_C0759 [Escherichia coli UTI89], gi\|91071364\|... gi\|209918006, gi... - gi\|209918006\|ref\|YP_002292090.1\| hypothetical protein ECSE_0815 [Escherichia coli SE11], gi\|20991126...	3.0E-11	[1..48]	[3..50]
gi\|110614167, gi... - gi\|110804619\|ref\|YP_688139.1\| hypothetical protein SFV_0578 [Shigella flexneri 5 str. 8401], gi\|1106...	6.0E-11	[1..48]	[1..48]
gi\|37525427, gi\|... - gi\|37525427\|ref\|NP_928771.1\| hypothetical protein plu1475 [Photorhabdus luminescens subsp. laumondii...	8.0E-8	[1..44]	[1..44]

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Predicted Domain #1

Region A:
Residues: [1-49]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLELLKSLVF AVIMVPVVMA IILGLIYGLG EVFNIFSGIG QKDQSRQNR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits