YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25513139, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25513139, gi|....

Description	E-value	Query Range	Subject Range
gi\|56128147, gi\|... - gi\|56413890\|ref\|YP_150965.1\| hypothetical protein SPA1732 [Salmonella enterica subsp. enterica serov... gi\|62179638, gi\|... - gi\|62179638\|ref\|YP_216055.1\| hypothetical protein SC1068 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=yccJ] [protein=hypothetical protein] [protein_id=YP_005236859.1] [location=complement(1163319.... gi\|205272052, gi... - gi\|205352271\|ref\|YP_002226072.1\| hypothetical protein SG1007 [Salmonella enterica subsp. enterica se... gi\|206708263, gi... - gi\|207856460\|ref\|YP_002243111.1\| hypothetical protein SEN0982 [Salmonella enterica subsp. enterica s... gi\|200389949, gi... - gi\|200389949\|ref\|ZP_03216560.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|204320359, gi... - gi\|204930900\|ref\|ZP_03221773.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|197094290, gi... - gi\|197362813\|ref\|YP_002142450.1\| hypothetical protein SSPA1610 [Salmonella enterica subsp. enterica ... gi\|197936886, gi... - gi\|198242370\|ref\|YP_002215049.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|197212618, gi... - gi\|197248915\|ref\|YP_002145987.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|197263612, gi... - gi\|197263612\|ref\|ZP_03163686.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|194458523, gi... - gi\|194472159\|ref\|ZP_03078143.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|194712241, gi... - gi\|194736739\|ref\|YP_002114116.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|194402942, gi... - gi\|194444279\|ref\|YP_002040373.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|194450051, gi... - gi\|194450051\|ref\|YP_002045118.1\| hypothetical protein SeHA_C1228 [Salmonella enterica subsp. enteric... gi\|16764476, gi\|... - gi\|16764476\|ref\|NP_460091.1\| hypothetical protein STM1118 [Salmonella typhimurium LT2], gi\|16419634\|... gi\|195630082, gi... - gi\|195630082\|gb\|EDX48734.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168821762, gi... - gi\|205341670\|gb\|EDZ28434.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205337247, gi... - gi\|205337247\|gb\|EDZ24011.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205347405, gi... - gi\|205347405\|gb\|EDZ34036.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205332490, gi... - gi\|205332490\|gb\|EDZ19254.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|168237181, gi... - gi\|197289786\|gb\|EDY29147.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|167552615, gi... - gi\|205322769\|gb\|EDZ10608.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|167993690, gi... - gi\|205328354\|gb\|EDZ15118.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161614680, gi... - gi\|161614680\|ref\|YP_001588645.1\| hypothetical protein SPAB_02431 [Salmonella enterica subsp. enteric... gi\|238911061 - gi\|238911061\|ref\|ZP_04654898.1\| hypothetical protein SentesTe_07977 [Salmonella enterica subsp. ente...	123.0	[0..1]	[75..1]
YCCJ_ECOLI - Hypothetical protein yccJ - Escherichia coli gi\|124529131, gi... - gi\|124529131\|ref\|ZP_01700241.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500086\|gb... gi\|254792260, gi... - gi\|254792260\|ref\|YP_003077097.1\| hypothetical protein ECSP_1173 [Escherichia coli O157:H7 str. TW143... gi\|238862856, gi... - gi\|238900263\|ref\|YP_002926059.1\| hypothetical protein BWG_0857 [Escherichia coli BW2952], gi\|2388628... gi\|226898227, gi... - gi\|237707017\|ref\|ZP_04537498.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227838796, gi... - gi\|227884044\|ref\|ZP_04001849.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783879... YCCJ_ECOL6 - Uncharacterized protein YccJ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yccJ ... gi\|24051292, gi\|... - gi\|24112416\|ref\|NP_706926.1\| hypothetical protein SF1007 [Shigella flexneri 2a str. 301], gi\|2405129... YCCJ_ECO57 - Uncharacterized protein YccJ OS=Escherichia coli O157:H7 GN=yccJ PE=4 SV=1 gi\|30062540, gi\|... - gi\|30062540\|ref\|NP_836711.1\| hypothetical protein S1076 [Shigella flexneri 2a str. 2457T], gi\|300407... gi\|15800924, gi\|... - gi\|15800924\|ref\|NP_286940.1\| hypothetical protein Z1422 [Escherichia coli O157:H7 EDL933], gi\|125142... EG12703 - uncharacterized protein / Uncharacterized protein, function unknown gi\|191166921, gi... - gi\|75229924\|ref\|ZP_00716441.1\| hypothetical protein EcolB7_01001855 [Escherichia coli B7A], gi\|19116... gi\|192955890, gi... - gi\|75234364\|ref\|ZP_00718734.1\| hypothetical protein EcolE1_01003737 [Escherichia coli E110019], gi\|1... gi\|191172443, gi... - gi\|75240610\|ref\|ZP_00724527.1\| hypothetical protein EcolF_01002328 [Escherichia coli F11], gi\|191172... gi\|75257446, gi\|... - gi\|75257446\|ref\|ZP_00728949.1\| hypothetical protein EcolE2_01002701 [Escherichia coli E22], gi\|19306... gi\|188489857, gi... - gi\|75513453\|ref\|ZP_00735857.1\| hypothetical protein Ecol5_01002443 [Escherichia coli 53638], gi\|1884... gi\|82776290, gi\|... - gi\|82776290\|ref\|YP_402639.1\| hypothetical protein SDY_0979 [Shigella dysenteriae Sd197], gi\|81240438... gi\|194422944, gi... - gi\|83586453\|ref\|ZP_00925087.1\| hypothetical protein Ecol1_01002347 [Escherichia coli 101-1], gi\|1944... gi\|157158367, gi... - gi\|75190067\|ref\|ZP_00703334.1\| hypothetical protein EcolE_01003361 [Escherichia coli E24377A], gi\|15... gi\|75195189, gi\|... - gi\|75195189\|ref\|ZP_00705259.1\| hypothetical protein EcolH_01000978 [Escherichia coli HS], gi\|1571605... gi\|194413512, gi... - gi\|75210282\|ref\|ZP_00710444.1\| hypothetical protein EcolB_01002527 [Escherichia coli B171], gi\|19442... YCCJ_SHIFL - Uncharacterized protein YccJ OS=Shigella flexneri GN=yccJ PE=4 SV=1 gi\|218356066, gi... - gi\|218548525\|ref\|YP_002382316.1\| hypothetical protein EFER_1154 [Escherichia fergusonii ATCC 35469],... gi\|218553591, gi... - gi\|218553591\|ref\|YP_002386504.1\| hypothetical protein ECIAI1_1047 [Escherichia coli IAI1], gi\|218360... gi\|218364662, gi... - gi\|218557893\|ref\|YP_002390806.1\| hypothetical protein ECS88_1017 [Escherichia coli S88], gi\|21836466... gi\|218426455, gi... - gi\|218688891\|ref\|YP_002397103.1\| hypothetical protein ECED1_1082 [Escherichia coli ED1a], gi\|2184264... gi\|218694538, gi... - gi\|218694538\|ref\|YP_002402205.1\| hypothetical protein EC55989_1113 [Escherichia coli 55989], gi\|2183... gi\|218370471, gi... - gi\|218700485\|ref\|YP_002408114.1\| hypothetical protein ECIAI39_2151 [Escherichia coli IAI39], gi\|2183... gi\|218704419, gi... - gi\|218704419\|ref\|YP_002411938.1\| hypothetical protein ECUMN_1185 [Escherichia coli UMN026], gi\|21843... gi\|170679966, gi... - gi\|170679966\|ref\|YP_001744172.1\| hypothetical protein EcSMS35_2121 [Escherichia coli SMS-3-5], gi\|17... gi\|195935260 - gi\|195935260\|ref\|ZP_03080642.1\| hypothetical protein EscherichcoliO157_02197 [Escherichia coli O157:... gi\|208732961, gi... - gi\|208816313\|ref\|ZP_03257492.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208738084, gi... - gi\|208822599\|ref\|ZP_03262918.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209397797, gi... - gi\|209397797\|ref\|YP_002269729.1\| hypothetical protein ECH74115_1241 [Escherichia coli O157:H7 str. E... gi\|209911515, gi... - gi\|209918256\|ref\|YP_002292340.1\| hypothetical protein ECSE_1065 [Escherichia coli SE11], gi\|20991151... gi\|215264255, gi... - gi\|215486183\|ref\|YP_002328614.1\| hypothetical protein E2348C_1054 [Escherichia coli O127:H6 str. E23... EG12703 - uncharacterized protein / Uncharacterized protein, function unknown gi\|217325202, gi... - gi\|217325202\|ref\|ZP_03441286.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|110641186, gi... - gi\|110641186\|ref\|YP_668916.1\| hypothetical protein ECP_1002 [Escherichia coli 536], gi\|110342778\|gb\|... gi\|110805019, gi... - gi\|110805019\|ref\|YP_688539.1\| hypothetical protein SFV_1015 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|89107854, gi\|... - gi\|89107854\|ref\|AP_001634.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|91210095, gi\|... - gi\|91210095\|ref\|YP_540081.1\| hypothetical protein UTI89_C1066 [Escherichia coli UTI89], gi\|91071669\|... gi\|13360619, gi\|... - gi\|15830413\|ref\|NP_309186.1\| hypothetical protein ECs1159 [Escherichia coli O157:H7 str. Sakai], gi\|... YCCJ_ECOL6 - Uncharacterized protein yccJ OS=Escherichia coli O6 GN=yccJ PE=4 SV=1 gi\|189366581, gi... - gi\|189366581\|gb\|EDU84997.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168767503, gi... - gi\|189363184\|gb\|EDU81603.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|187770475, gi... - gi\|187770475\|gb\|EDU34319.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189001328, gi... - gi\|189001328\|gb\|EDU70314.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189372673, gi... - gi\|189372673\|gb\|EDU91089.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168800636, gi... - gi\|189377133\|gb\|EDU95549.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|169755524, gi... - gi\|170020596\|ref\|YP_001725550.1\| hypothetical protein EcolC_2592 [Escherichia coli ATCC 8739], gi\|16... gi\|169888497, gi... - gi\|170080662\|ref\|YP_001729982.1\| hypothetical protein ECDH10B_1075 [Escherichia coli str. K-12 subst... gi\|168747378, gi... - gi\|188018066\|gb\|EDU56188.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189358274, gi... - gi\|189358274\|gb\|EDU76693.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g...	122.0	[0..1]	[75..1]
gi\|73855037, gi\|... - gi\|74311560\|ref\|YP_309979.1\| hypothetical protein SSON_1013 [Shigella sonnei Ss046], gi\|73855037\|gb\|...	120.0	[0..1]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTQEAKAHR VGEWASLRNT SPEIAEAIFE VAHYDEKLAE KIWEEGSDEV LIKAFEKTDK  60
   61 DSLFWGEQVI ERKNV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits