YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29142216, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29142216, gi|....

Description	E-value	Query Range	Subject Range
gi\|21959124, gi\|... - gi\|22126161\|ref\|NP_669584.1\| putative hydrolase [Yersinia pestis KIM], gi\|21959124\|gb\|AAM85835.1\|AE0...	6.0E-51	[1..245]	[38..282]
gi\|166207676, gi... - gi\|166210496\|ref\|ZP_02236531.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. B42003... gi\|167401369, gi... - gi\|167401369\|ref\|ZP_02306866.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|45441683, gi\|... - gi\|45441683\|ref\|NP_993222.1\| putative hydrolase [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|166961860, gi... - gi\|167420165\|ref\|ZP_02311918.1\| putative phosphoesterase [Yersinia pestis biovar Orientalis str. MG0... gi\|229898094, gi... - gi\|229898094\|ref\|ZP_04513243.1\| predicted zinc-binding hydrolase [Yersinia pestis biovar Orientalis ... Y2037_YERPE - Probable phosphatase YPO2037/y2275/YP_1880 OS=Yersinia pestis GN=YPO2037 PE=3 SV=1 gi\|167056295, gi... - gi\|167424413\|ref\|ZP_02316166.1\| putative phosphoesterase [Yersinia pestis biovar Mediaevalis str. K1... gi\|229897447, gi... - gi\|229897447\|ref\|ZP_04512603.1\| predicted zinc-binding hydrolase [Yersinia pestis biovar Orientalis ... gi\|16122276, gi\|... - gi\|218929144\|ref\|YP_002347019.1\| putative hydrolase [Yersinia pestis CO92], gi\|16122276\|ref\|NP_40558... Y2165_YERPY - Probable phosphatase YPK_2165 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_2165... gi\|229894743, gi... - gi\|229894743\|ref\|ZP_04509923.1\| predicted zinc-binding hydrolase [Yersinia pestis Pestoides A], gi\|2... Y2019_YERPS - Probable phosphatase YPTB2019 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB2019... Y2077_YERPB - Probable phosphatase YPTS_2077 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_207... gi\|165921605, gi... - gi\|165926384\|ref\|ZP_02222216.1\| putative phosphoesterase [Yersinia pestis biovar Orientalis str. F19... gi\|166009251, gi... - gi\|166009251\|ref\|ZP_02230149.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. E19790... Y2053_YERP3 - Probable phosphatase YpsIP31758_2053 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) ... Y2019_YERPS - Probable phosphatase YPTB2019 OS=Yersinia pseudotuberculosis GN=YPTB2019 PE=3 SV=1 Y1419_YERPA - Probable phosphatase YPA_1419 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_1419 PE=3 SV=1 gi\|149366034, gi... - gi\|149366034\|ref\|ZP_01888069.1\| putative hydrolase [Yersinia pestis CA88-4125], gi\|149292447\|gb\|EDM4... Y1514_YERPN - Probable phosphatase YPN_1514 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_1514 PE=3 SV=1 Y1086_YERPP - Probable phosphatase YPDSF_1086 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1086 PE=3 SV=1 gi\|89104305, gi\|... - gi\|89104305\|ref\|ZP_01176852.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	9.0E-50	[1..245]	[1..245]
Y2446_YERPG - Probable phosphatase YpAngola_A2446 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A2446...	2.0E-49	[1..245]	[1..245]
gi\|238728195, gi... - gi\|77979768\|ref\|ZP_00835184.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	3.0E-49	[1..245]	[1..245]
EG13870 - alkaline phosphatase / Alkaline phosphatase; required for swarming phenotype; chaperoned by YcdY YCDX_ECOLI - Putative hydrolase ycdX (EC 3.1.-.-) - Escherichia coli YCDX_ECOBW - Probable phosphatase YcdX OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ycdX PE=3 SV=1 gi\|89107879, gi\|... - gi\|89107879\|ref\|AP_001659.1\| predicted zinc-binding hydrolase [Escherichia coli str. K-12 substr. W3... YCDX_ECODH - Probable phosphatase YcdX OS=Escherichia coli (strain K12 / DH10B) GN=ycdX PE=3 SV=1 EG13870 - alkaline phosphatase / Alkaline phosphatase; required for swarming phenotype; chaperoned by YcdY	5.0E-49	[1..245]	[1..245]
gi\|238715871, gi... - gi\|77959370\|ref\|ZP_00823390.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	7.0E-49	[1..245]	[1..245]
gi\|77973508, gi\|... - gi\|77973508\|ref\|ZP_00829055.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	1.0E-48	[1..245]	[1..245]
Y2529_PECAS - Probable phosphatase ECA2529 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA... Y2529_ERWCT - Probable phosphatase ECA2529 OS=Erwinia carotovora subsp. atroseptica GN=ECA2529 PE=3 SV=1	2.0E-48	[1..245]	[1..245]
gi\|238797838, gi... - gi\|77959912\|ref\|ZP_00823832.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	2.0E-48	[1..245]	[1..245]
Y1420_SHELP - Probable phosphatase Shew_1420 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=Shew_1420 PE=3...	8.0E-48	[1..245]	[1..246]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPVDLHMHT VASTHAYSTL SDYIAEAKRK GIKLFAITDH GPDMEDAPHH WHFINMRIWP  60
   61 RLVDGVGILR GIEANIKNIN GEIDCSGKMF DSLDLIIAGF HEPVFAPHDK ETNTQAMIAT 120
  121 IASGKVHIIS HPGNPKYPVE VKAIAQAAAK HHVALEINNS SFLHSRKGSE DNCRAVAAAV 180
  181 RDAGGWVALG SDSHTAFTLG DFTECRKILD AVNFPEDRIL NVSPQRLLAF LESRGMAPVP 240
  241 EFAEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits