YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29142209, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29142209, gi|....

Description	E-value	Query Range	Subject Range
gi\|200390178, gi... - gi\|200390178\|ref\|ZP_03216789.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serov... gi\|205357318, gi... - gi\|205357318\|ref\|ZP_02346825.2\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serov... gi\|205358032, gi... - gi\|205358032\|ref\|ZP_02575093.2\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serov... gi\|205358796, gi... - gi\|205358796\|ref\|ZP_02659121.2\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serov... gi\|197248940, gi... - gi\|197248940\|ref\|YP_002146902.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=csgB] [protein=curlin minor subunit] [protein_id=YP_005236893.1] [location=1189295..1189750] CSGB_SALTY - Minor curlin subunit OS=Salmonella typhimurium GN=csgB PE=3 SV=1 gi\|197242978, gi... - gi\|197264723\|ref\|ZP_03164797.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serov... CSGB_SALEN - Minor curlin subunit OS=Salmonella enteritidis GN=csgB PE=1 SV=1 gi\|197362792, gi... - gi\|197362792\|ref\|YP_002142429.1\| curlin minor subunit [Salmonella enterica subsp. enterica serovar P... gi\|198243106, gi... - gi\|198243106\|ref\|YP_002215995.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica sero... gi\|195630318, gi... - gi\|195630318\|gb\|EDX48944.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serovar N... gi\|205341050, gi... - gi\|205341050\|gb\|EDZ27814.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serovar W... gi\|194445298, gi... - gi\|194445298\|ref\|YP_002040396.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica sero... gi\|194469795, gi... - gi\|194469795\|ref\|ZP_03075779.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serov... CSGB_SALTY - Minor curlin subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=csgB PE=3 SV... gi\|161614639, gi... - gi\|161614639\|ref\|YP_001588604.1\| curlin minor subunit [Salmonella enterica subsp. enterica serovar P... CSGB_SALEN - Minor curlin subunit OS=Salmonella enteritidis GN=csgB PE=3 SV=1 gi\|168264071, gi... - gi\|205347345\|gb\|EDZ33976.1\| minor curlin protein CsgB [Salmonella enterica subsp. enterica serovar H... gi\|62127294, gi\|... - gi\|62179661\|ref\|YP_216078.1\| curlin minor subunit [Salmonella enterica subsp. enterica serovar Chole... gi\|56128126, gi\|... - gi\|56413869\|ref\|YP_150944.1\| curlin minor subunit [Salmonella enterica subsp. enterica serovar Parat... CSGB_SALTY - Minor curlin subunit OS=Salmonella typhimurium GN=csgB PE=3 SV=1 gi\|206709152, gi... - gi\|207857349\|ref\|YP_002244000.1\| curlin minor subunit [Salmonella enterica subsp. enterica serovar E...	6.0E-34	[1..151]	[1..151]
gi\|31790493 - gi\|31790493\|emb\|CAD56671.1\| nucleation component of curlin monomers [Citrobacter sp. Fec2]	6.0E-33	[1..151]	[1..151]
gi\|110805050, gi... - gi\|110805050\|ref\|YP_688570.1\| curlin minor subunit [Shigella flexneri 5 str. 8401], gi\|110614598\|gb\|...	5.0E-30	[1..151]	[1..151]
gi\|31790497 - gi\|31790497\|emb\|CAD56674.1\| nucleation component of curlin monomers [Citrobacter freundii]	6.0E-30	[1..151]	[1..152]
gi\|30062565, gi\|... - gi\|30062565\|ref\|NP_836736.1\| curlin minor subunit [Shigella flexneri 2a str. 2457T], gi\|30040811\|gb\|... gi\|56383351, gi\|... - gi\|56479800\|ref\|NP_706951.2\| curlin minor subunit [Shigella flexneri 2a str. 301], gi\|56383351\|gb\|AA...	3.0E-29	[1..151]	[1..151]
gi\|31790501 - gi\|31790501\|emb\|CAD56677.1\| nucleation component of curlin monomers [Enterobacter sakazakii]	4.0E-29	[1..151]	[1..151]
gi\|124531167, gi... - gi\|124531167\|ref\|ZP_01701522.1\| Curlin associated repeat protein [Escherichia coli B], gi\|124498786\|... EG12621 - curlin nucleator protein, minor subunit in curli complex / Curli nucleator protein curlin CsgB, mino... gi\|209918295, gi... - gi\|209918295\|ref\|YP_002292379.1\| curlin minor subunit [Escherichia coli SE11], gi\|209911554\|dbj\|BAG7... gi\|195935430 - gi\|195935430\|ref\|ZP_03080812.1\| curlin minor subunit [Escherichia coli O157:H7 str. EC4024] gi\|194438059, gi... - gi\|194438059\|ref\|ZP_03070152.1\| minor curlin protein CsgB [Escherichia coli 101-1], gi\|194422995\|gb\|... gi\|194428443, gi... - gi\|194428443\|ref\|ZP_03060983.1\| minor curlin protein CsgB [Escherichia coli B171], gi\|194413495\|gb\|E... gi\|89107886, gi\|... - gi\|89107886\|ref\|AP_001666.1\| curlin nucleator protein, minor subunit in curli complex [Escherichia c... gi\|218704449, gi... - gi\|218704449\|ref\|YP_002411968.1\| curlin minor subunit [Escherichia coli UMN026], gi\|218431546\|emb\|CA... gi\|15830673, gi\|... - gi\|15830673\|ref\|NP_309446.1\| curlin minor subunit [Escherichia coli O157:H7 str. Sakai], gi\|13360879... gi\|218426558, gi... - gi\|218688994\|ref\|YP_002397206.1\| curlin minor subunit [Escherichia coli ED1a], gi\|218426558\|emb\|CAR0... gi\|110641218, gi... - gi\|110641218\|ref\|YP_668948.1\| curlin minor subunit [Escherichia coli 536], gi\|110342810\|gb\|ABG69047.... gi\|218360387, gi... - gi\|218553619\|ref\|YP_002386532.1\| curlin minor subunit [Escherichia coli IAI1], gi\|218360387\|emb\|CAQ9... gi\|215486251, gi... - gi\|215486251\|ref\|YP_002328682.1\| curlin minor subunit [Escherichia coli O127:H6 str. E2348/69], gi\|2... gi\|169888528, gi... - gi\|170080693\|ref\|YP_001730013.1\| curlin nucleator protein, minor subunit in curli complex [Escherich... gi\|170020562, gi... - gi\|170020562\|ref\|YP_001725516.1\| curlin minor subunit [Escherichia coli ATCC 8739], gi\|169755490\|gb\|... CSGB_ECO57 - Minor curlin subunit OS=Escherichia coli O157:H7 GN=csgB PE=3 SV=1 gi\|12514573, gi\|... - gi\|15801158\|ref\|NP_287175.1\| curlin minor subunit [Escherichia coli O157:H7 EDL933], gi\|12514573\|gb\|... EG12621 - curlin nucleator protein, minor subunit in curli complex / Curli nucleator protein curlin CsgB, mino... gi\|157160564, gi... - gi\|157160564\|ref\|YP_001457882.1\| curlin minor subunit [Escherichia coli HS], gi\|157066244\|gb\|ABV0549... gi\|251784574, gi... - gi\|251784574\|ref\|YP_002998878.1\| hypothetical protein B21_01045 [Escherichia coli BL21], gi\|24237684... gi\|238860685, gi... - gi\|238900296\|ref\|YP_002926092.1\| curlin nucleator protein, minor subunit in curli complex [Escherich... gi\|253973049, gi... - gi\|254161148\|ref\|YP_003044256.1\| curlin nucleator protein, minor subunit in curli complex [Escherich... gi\|253773934, gi... - gi\|254287956\|ref\|YP_003053704.1\| curlin nucleator protein, minor subunit in curli complex [Escherich... CSGB_ECOLI - Minor curlin subunit precursor - Escherichia coli gi\|254792425, gi... - gi\|254792425\|ref\|YP_003077262.1\| curlin nucleator protein, minor subunit in curli complex [Escherich...	4.0E-29	[1..151]	[1..151]
gi\|188493303, gi... - gi\|75513487\|ref\|ZP_00735891.1\| hypothetical protein Ecol5_01002477 [Escherichia coli 53638], gi\|1884... gi\|192927845, gi... - gi\|75257480\|ref\|ZP_00728983.1\| hypothetical protein EcolE2_01002735 [Escherichia coli E22], gi\|19306... gi\|75240640, gi\|... - gi\|75240640\|ref\|ZP_00724557.1\| hypothetical protein EcolF_01002358 [Escherichia coli F11], gi\|191172... gi\|192957232, gi... - gi\|75235959\|ref\|ZP_00720096.1\| hypothetical protein EcolE1_01002473 [Escherichia coli E110019], gi\|1... gi\|168747189, gi... - gi\|188018202\|gb\|EDU56324.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|191166928, gi... - gi\|75229948\|ref\|ZP_00716465.1\| hypothetical protein EcolB7_01001879 [Escherichia coli B7A], gi\|19116... gi\|75210317 - gi\|75210317\|ref\|ZP_00710479.1\| hypothetical protein EcolB_01002562 [Escherichia coli B171] gi\|209160048, gi... - gi\|209398648\|ref\|YP_002269889.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4115], g... gi\|217328047, gi... - gi\|217328047\|ref\|ZP_03444129.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. TW14588], g... gi\|208732574, gi... - gi\|208815926\|ref\|ZP_03257105.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4045], gi... gi\|208737600, gi... - gi\|208822115\|ref\|ZP_03262434.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4042], gi... gi\|75195227 - gi\|75195227\|ref\|ZP_00705297.1\| hypothetical protein EcolH_01001016 [Escherichia coli HS] gi\|189363076, gi... - gi\|189363076\|gb\|EDU81495.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|157158515, gi... - gi\|75190102\|ref\|ZP_00703369.1\| hypothetical protein EcolE_01003396 [Escherichia coli E24377A], gi\|15... gi\|168773883, gi... - gi\|187770536\|gb\|EDU34380.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|83586422 - gi\|83586422\|ref\|ZP_00925056.1\| hypothetical protein Ecol1_01002316 [Escherichia coli 101-1] gi\|189358323, gi... - gi\|189358323\|gb\|EDU76742.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|189368808, gi... - gi\|189368808\|gb\|EDU87224.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|189405809, gi... - gi\|189405809\|ref\|ZP_02824324.2\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC508], gi\|... gi\|208727486, gi... - gi\|208807685\|ref\|ZP_03250022.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4206], gi... gi\|188999092, gi... - gi\|188999092\|gb\|EDU68078.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|189370498, gi... - gi\|189370498\|gb\|EDU88914.1\| minor curlin protein CsgB [Escherichia coli O157:H7 str. EC869], gi\|1687...	5.0E-29	[1..151]	[10..160]
gi\|227836807, gi... - gi\|227886603\|ref\|ZP_04004408.1\| curlin minor subunit [Escherichia coli 83972], gi\|227836807\|gb\|EEJ47... gi\|26247178, gi\|... - gi\|26247178\|ref\|NP_753218.1\| curlin minor subunit [Escherichia coli CFT073], gi\|26107579\|gb\|AAN79778...	8.0E-29	[1..151]	[10..160]
gi\|117623230, gi... - gi\|117623230\|ref\|YP_852143.1\| curlin minor subunit [Escherichia coli APEC O1], gi\|115512354\|gb\|ABJ00... gi\|170684268, gi... - gi\|170684268\|ref\|YP_001744142.1\| minor curlin protein CsgB [Escherichia coli SMS-3-5], gi\|170521986\|... gi\|237706976, gi... - gi\|237706976\|ref\|ZP_04537457.1\| minor curlin subunit CsgB [Escherichia sp. 3_2_53FAA], gi\|226898186\|... gi\|91210191, gi\|... - gi\|91210191\|ref\|YP_540177.1\| curlin minor subunit [Escherichia coli UTI89], gi\|91071765\|gb\|ABE06646....	1.0E-28	[1..151]	[10..160]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKLLFMML TILGAPGIAT ATNYDLARSE YNFAVNELSK SSFNQAAIIG QVGTDNSARV  60
   61 RQEGSKLLSV ISQEGENNRA KVDQAGNYNF AYIEQTGNAN DASISQSAYG NSAAIIQKGS 120
  121 GNKANITQYG TQKTAVVVQK QSHMAIRVTQ R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits