YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16760027
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	511 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16760027.

Description	E-value	Query Range	Subject Range
gi\|168801990, gi... - gi\|189375926\|gb\|EDU94342.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC508], gi... OPGG_ECOSM - Glucans biosynthesis protein G OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdoG PE=3 SV=1 gi\|192927754, gi... - gi\|193064502\|ref\|ZP_03045582.1\| glucans biosynthesis protein G [Escherichia coli E22], gi\|192927754\|... gi\|193069450, gi... - gi\|193069450\|ref\|ZP_03050404.1\| glucans biosynthesis protein G [Escherichia coli E110019], gi\|192957... gi\|194413504, gi... - gi\|194428452\|ref\|ZP_03060992.1\| glucans biosynthesis protein G [Escherichia coli B171], gi\|194413504... gi\|195935437 - gi\|195935437\|ref\|ZP_03080819.1\| glucan biosynthesis protein G [Escherichia coli O157:H7 str. EC4024] gi\|208727804, gi... - gi\|208808003\|ref\|ZP_03250340.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4206... gi\|208816276, gi... - gi\|208816276\|ref\|ZP_03257455.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4045... gi\|188018175, gi... - gi\|188018175\|gb\|EDU56297.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4113], g... gi\|168754526, gi... - gi\|189358218\|gb\|EDU76637.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4401], g... gi\|168760613, gi... - gi\|189368735\|gb\|EDU87151.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4501], g... gi\|168767704, gi... - gi\|189363142\|gb\|EDU81561.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4486], g... gi\|187770342, gi... - gi\|187770342\|gb\|EDU34186.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4196], g... gi\|188999101, gi... - gi\|188999101\|gb\|EDU68087.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4076], g... gi\|168789980, gi... - gi\|189370499\|gb\|EDU88915.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC869], gi... OPGG_ECOUT - Glucans biosynthesis protein G OS=Escherichia coli (strain UTI89 / UPEC) GN=mdoG PE=3 SV=1 gi\|208738268, gi... - gi\|208822783\|ref\|ZP_03263102.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. EC4042... OPGG_ECO5E - Glucans biosynthesis protein G OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=mdoG PE=3 SV=1 gi\|217318765, gi... - gi\|217328338\|ref\|ZP_03444420.1\| glucans biosynthesis protein G [Escherichia coli O157:H7 str. TW1458... gi\|227886594, gi... - gi\|227886594\|ref\|ZP_04004399.1\| glucan biosynthesis protein G [Escherichia coli 83972], gi\|227836798... gi\|226898177, gi... - gi\|237706967\|ref\|ZP_04537448.1\| periplasmic glucans biosynthesis protein mdoG [Escherichia sp. 3_2_5... gi\|75513493 - gi\|75513493\|ref\|ZP_00735897.1\| COG3131: Periplasmic glucans biosynthesis protein [Escherichia coli 5... gi\|191172471, gi... - gi\|75240646\|ref\|ZP_00724563.1\| COG3131: Periplasmic glucans biosynthesis protein [Escherichia coli F... gi\|75195234 - gi\|75195234\|ref\|ZP_00705304.1\| COG3131: Periplasmic glucans biosynthesis protein [Escherichia coli H... gi\|75190108 - gi\|75190108\|ref\|ZP_00703375.1\| COG3131: Periplasmic glucans biosynthesis protein [Escherichia coli E... OPGG_ECOK1 - Glucans biosynthesis protein G OS=Escherichia coli O1:K1 / APEC GN=mdoG PE=3 SV=1 gi\|124531161, gi... - gi\|124531161\|ref\|ZP_01701516.1\| periplasmic glucan biosynthesis protein, MdoG [Escherichia coli B], ... gi\|26247186, gi\|... - gi\|26247186\|ref\|NP_753226.1\| glucan biosynthesis protein G [Escherichia coli CFT073], gi\|26107587\|gb...	0.0	[1..511]	[7..517]
gi\|194438102, gi... - gi\|194438102\|ref\|ZP_03070195.1\| glucans biosynthesis protein G [Escherichia coli 101-1], gi\|19442303... tr\|A0A0X8UIB9\|A0... - Glucan biosynthesis protein G OS=Escherichia coli (strain K12) GN=mdoG PE=4 SV=1 gi\|194419284, gi... - gi\|194432397\|ref\|ZP_03064684.1\| glucans biosynthesis protein G [Shigella dysenteriae 1012], gi\|19441... gi\|75229954, gi\|... - gi\|75229954\|ref\|ZP_00716471.1\| COG3131: Periplasmic glucans biosynthesis protein [Escherichia coli B...	0.0	[1..511]	[7..517]
OPGG_SALPK - Glucans biosynthesis protein G OS=Salmonella paratyphi A (strain AKU_12601) GN=mdoG PE=3 SV=1 OPGG_SALPA - Glucans biosynthesis protein G OS=Salmonella paratyphi A GN=mdoG PE=3 SV=1 OPGG_SALPA - Glucans biosynthesis protein G OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=mdoG PE=3 SV...	0.0	[1..511]	[1..511]
gi\|209773650, gi... - pir\|\|F85666 periplasmic glucans biosynthesis protein [imported] - Escherichia coli (strain O157:H7, ... OPGG_ECO24 - Glucans biosynthesis protein G OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdoG PE=3 SV=... OPGG_SHISS - Glucans biosynthesis protein G OS=Shigella sonnei (strain Ss046) GN=mdoG PE=3 SV=1 gi\|15801165, gi\|... - gi\|15801165\|ref\|NP_287182.1\| glucan biosynthesis protein G [Escherichia coli O157:H7 EDL933], gi\|125... OPGG_ECO81 - Glucans biosynthesis protein G OS=Escherichia coli O81 (strain ED1a) GN=mdoG PE=3 SV=1 OPGG_ECO55 - Glucans biosynthesis protein G OS=Escherichia coli (strain 55989 / EAEC) GN=mdoG PE=3 SV=1 OPGG_ECO7I - Glucans biosynthesis protein G OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mdoG PE=3 SV=1 OPGG_ECOLU - Glucans biosynthesis protein G OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdoG PE=3 ... gi\|188494203, gi... - gi\|188494203\|ref\|ZP_03001473.1\| glucans biosynthesis protein G [Escherichia coli 53638], gi\|18848940... OPGG_ECOLC - Glucans biosynthesis protein G OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdoG PE... OPGG_ECOSE - Glucans biosynthesis protein G OS=Escherichia coli (strain SE11) GN=mdoG PE=3 SV=1 gi\|254792432, gi... - gi\|254792432\|ref\|YP_003077269.1\| glucan biosynthesis protein, periplasmic [Escherichia coli O157:H7 ... OPGG_ECO27 - Glucans biosynthesis protein G OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdoG PE=3 SV=... OPGG_ECO45 - Glucans biosynthesis protein G OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdoG PE=3 SV=1 OPGG_ECOHS - Glucans biosynthesis protein G OS=Escherichia coli O9:H4 (strain HS) GN=mdoG PE=3 SV=1 OPGG_SHIB3 - Glucans biosynthesis protein G OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdoG P... gi\|15830680, gi\|... - gi\|15830680\|ref\|NP_309453.1\| glucan biosynthesis protein G [Escherichia coli O157:H7 str. Sakai], gi... OPGG_ECOL5 - Glucans biosynthesis protein G OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdoG PE=3 SV=1 sp\|B7UP63\|OPGG_ECO27 - Glucans biosynthesis protein G OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdoG PE=3 SV=... OPGG_ECO57 - Glucans biosynthesis protein G OS=Escherichia coli O157:H7 GN=mdoG PE=3 SV=1 OPGG_ECOL6 - Glucans biosynthesis protein G OS=Escherichia coli O6 GN=mdoG PE=3 SV=1 OPGG_ECOL6 - Glucans biosynthesis protein G OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=mdo...	0.0	[1..511]	[1..511]
OPGG_ECODH - Glucans biosynthesis protein G OS=Escherichia coli (strain K12 / DH10B) GN=mdoG PE=3 SV=1 gi\|1651515, gi\|8... - gi\|89107895\|ref\|AP_001675.1\| glucan biosynthesis protein, periplasmic [Escherichia coli str. K-12 su... OPGG_ECOBW - Glucans biosynthesis protein G OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=mdoG PE=3 SV=1 gi\|251784581, gi... - gi\|251784581\|ref\|YP_002998885.1\| hypothetical protein B21_01052 [Escherichia coli BL21], gi\|24237685... gi\|253977270, gi... - gi\|254287963\|ref\|YP_003053711.1\| glucan biosynthesis protein, periplasmic [Escherichia coli BL21(DE3... gi\|253973056, gi... - gi\|254161155\|ref\|YP_003044263.1\| glucan biosynthesis protein, periplasmic [Escherichia coli B str. R... OPGG_ECOLI - Glucans biosynthesis protein G precursor - Escherichia coli gi\|83570506 - gi\|83570506\|ref\|ZP_00921950.1\| COG3131: Periplasmic glucans biosynthesis protein [Shigella dysenteri... EG11885 - OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase / OPG biosynthetic beta-1,6 bran... gi\|83586416 - gi\|83586416\|ref\|ZP_00925050.1\| COG3131: Periplasmic glucans biosynthesis protein [Escherichia coli 1... EG11885 - OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase / OPG biosynthetic beta-1,6 bran...	0.0	[1..511]	[1..511]
OPGG_SHIDS - Glucans biosynthesis protein G OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdoG PE=3 SV=1	0.0	[1..511]	[1..511]
gi\|30062573, gi\|... - gi\|30062573\|ref\|NP_836744.1\| glucan biosynthesis protein G [Shigella flexneri 2a str. 2457T], gi\|300... gi\|56479804, gi\|... - gi\|56479804\|ref\|NP_706959.2\| glucan biosynthesis protein G [Shigella flexneri 2a str. 301], gi\|56383... OPGG_SHIFL - Glucans biosynthesis protein G OS=Shigella flexneri GN=mdoG PE=3 SV=2	0.0	[1..511]	[1..511]
gi\|75257486 - gi\|75257486\|ref\|ZP_00728989.1\| COG3131: Periplasmic glucans biosynthesis protein [Escherichia coli E...	0.0	[2..511]	[1..510]
OPGG_SHIBS - Glucans biosynthesis protein G OS=Shigella boydii serotype 4 (strain Sb227) GN=mdoG PE=3 SV=1	0.0	[1..511]	[1..511]
gi\|62127300, gi\|... - gi\|62179667\|ref\|YP_216084.1\| glucan biosynthesis protein G [Salmonella enterica subsp. enterica sero...	0.0	[4..511]	[1..508]

Back

Predicted Domain #1

Region A:
Residues: [1-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKMRWLGAA IMLTLYASSS WAFSIDDVAK QAQSLAGKGY EAPKSNLPSV FRDMKYADYQ  60
   61 QIQFNSDKAY WNNLKTPFKL EFYHQGMYFD TPVKINEVTA TTVKRIKYSP DYFNFGNVQH 120
  121 DKDTVKDLGF AGFKVLYPIN SKDKNDEIVS MLGASYFRVI GAGQVYGLSA RGLAIDTALP 180
  181 SGEEFPRFRE FWIERPKPTD KRLTVYALLD SPRATGAYRF VIIPGRDTVV DVQSKVYLRD 240
  241 KVGKLGVAPL TSMFLFGPNQ PSPTTNYRPE LHDSNGLSIH AGNGEWIWRP LNNPKHLAVS 300
  301 SYAMENPQGF GLLQRGREFS RFEDLDDRYD LRPSAWITPK GDWGKGKVEL VEIPTNDETN 360
  361 DNIVAYWTPD QLPEPGKEMN FKYTLTFSRD EDKLHAPDNA WVLQTRRSTG DVKQSNLIRQ 420
  421 PDGTIAFVVD FVGADMKKLP PDTPVAAQTS IGDNGEIVDS NVRYNPVTKG WRLMLRVKVK 480
  481 DAKKTTEMRA ALVNADQTLS ETWSYQLPAN E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1txkA
Description:	Crystal structure of Escherichia coli OpgG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, hydrolyzing O-glycosyl compounds	1.21071216404379	bayes_pls_golite062009
binding	1.07947257986943	bayes_pls_golite062009
catalytic activity	0.770933849734279	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.68102716507433	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.57734115168193	bayes_pls_golite062009
racemase and epimerase activity	0.473636146090495	bayes_pls_golite062009
protein binding	0.311235686251767	bayes_pls_golite062009
isomerase activity	0.106573908779409	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: