YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29137742, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29137742, gi|....

Description	E-value	Query Range	Subject Range
gi\|91069474, gi\|... - gi\|91205930\|ref\|YP_538285.1\| cation transport regulator ChaB [Rickettsia bellii RML369-C], gi\|910694...	102.0	[0..1]	[73..13]
gi\|62737946 - gi\|62737946\|pdb\|1SG7\|A Chain A, Nmr Solution Structure Of The Putative Cation Transport Regulator Ch...	101.0	[0..2]	[75..22]
gi\|20905180, gi\|... - gi\|21226875\|ref\|NP_632797.1\| putative cation transport regulator [Methanosarcina mazei Go1], gi\|2090...	101.0	[0..1]	[75..6]
gi\|189376334, gi... - gi\|189376334\|gb\|EDU94750.1\| chaB protein [Escherichia coli O157:H7 str. EC508], gi\|168801532\|ref\|ZP_... gi\|169755341, gi... - gi\|170020413\|ref\|YP_001725367.1\| cation transport regulator [Escherichia coli ATCC 8739], gi\|1697553... gi\|170080848, gi... - gi\|170080848\|ref\|YP_001730168.1\| cation regulator [Escherichia coli str. K-12 substr. DH10B], gi\|169... gi\|170520487, gi... - gi\|170682769\|ref\|YP_001743975.1\| chaB protein [Escherichia coli SMS-3-5], gi\|170520487\|gb\|ACB18665.1... gi\|195939107 - gi\|195939107\|ref\|ZP_03084489.1\| cation transport regulator [Escherichia coli O157:H7 str. EC4024] gi\|208808837, gi... - gi\|208808837\|ref\|ZP_03251174.1\| chaB protein [Escherichia coli O157:H7 str. EC4206], gi\|208728638\|gb... gi\|208814880, gi... - gi\|208814880\|ref\|ZP_03256059.1\| chaB protein [Escherichia coli O157:H7 str. EC4045], gi\|208731528\|gb... gi\|208738163, gi... - gi\|208822678\|ref\|ZP_03262997.1\| chaB protein [Escherichia coli O157:H7 str. EC4042], gi\|208738163\|gb... gi\|188015081, gi... - gi\|188015081\|gb\|EDU53203.1\| chaB protein [Escherichia coli O157:H7 str. EC4113], gi\|168750779\|ref\|ZP... gi\|189354980, gi... - gi\|189354980\|gb\|EDU73399.1\| chaB protein [Escherichia coli O157:H7 str. EC4401], gi\|168758144\|ref\|ZP... gi\|189365625, gi... - gi\|189365625\|gb\|EDU84041.1\| chaB protein [Escherichia coli O157:H7 str. EC4501], gi\|168764374\|ref\|ZP... gi\|189360045, gi... - gi\|189360045\|gb\|EDU78464.1\| chaB protein [Escherichia coli O157:H7 str. EC4486], gi\|168771108\|ref\|ZP... gi\|187767808, gi... - gi\|187767808\|gb\|EDU31652.1\| chaB protein [Escherichia coli O157:H7 str. EC4196], gi\|168776889\|ref\|ZP... gi\|188999968, gi... - gi\|188999968\|gb\|EDU68954.1\| chaB protein [Escherichia coli O157:H7 str. EC4076], gi\|168782575\|ref\|ZP... gi\|189372576, gi... - gi\|189372576\|gb\|EDU90992.1\| chaB protein [Escherichia coli O157:H7 str. EC869], gi\|168787723\|ref\|ZP_... gi\|82544328, gi\|... - gi\|82544328\|ref\|YP_408275.1\| cation transport regulator [Shigella boydii Sb227], gi\|81245739\|gb\|ABB6... gi\|74312443, gi\|... - gi\|74312443\|ref\|YP_310862.1\| cation transport regulator [Shigella sonnei Ss046], gi\|73855920\|gb\|AAZ8... gi\|82776560, gi\|... - gi\|82776560\|ref\|YP_402909.1\| cation transport regulator [Shigella dysenteriae Sd197], gi\|81240708\|gb... gi\|209399522, gi... - gi\|209399522\|ref\|YP_002270151.1\| chaB protein [Escherichia coli O157:H7 str. EC4115], gi\|209160922\|g... gi\|217328401, gi... - gi\|217328401\|ref\|ZP_03444483.1\| chaB protein [Escherichia coli O157:H7 str. TW14588], gi\|217318828\|g... gi\|218558147, gi... - gi\|218558147\|ref\|YP_002391060.1\| cation transport regulator [Escherichia coli S88], gi\|218364916\|emb... gi\|218699926, gi... - gi\|218699926\|ref\|YP_002407555.1\| cation transport regulator [Escherichia coli IAI39], gi\|218369912\|e... gi\|157066405, gi... - gi\|75195370\|ref\|ZP_00705440.1\| COG4572: Putative cation transport regulator [Escherichia coli HS], g... gi\|218431838, gi... - gi\|218704741\|ref\|YP_002412260.1\| cation transport regulator [Escherichia coli UMN026], gi\|218431838\|... gi\|190908643, gi... - gi\|75242021\|ref\|ZP_00725815.1\| COG4572: Putative cation transport regulator [Escherichia coli F11], ... gi\|194417490, gi... - gi\|83569307\|ref\|ZP_00920763.1\| COG4572: Putative cation transport regulator [Shigella dysenteriae 10... gi\|194436970, gi... - gi\|83587361\|ref\|ZP_00925989.1\| COG4572: Putative cation transport regulator [Escherichia coli 101-1]... CHAB_ECOLI - Cation transport regulator chaB - Escherichia coli gi\|254792689, gi... - gi\|254792689\|ref\|YP_003077526.1\| predicted cation regulator [Escherichia coli O157:H7 str. TW14359],... gi\|253973203, gi... - gi\|254161302\|ref\|YP_003044410.1\| cation transport regulator [Escherichia coli B str. REL606], gi\|253... gi\|253773782, gi... - gi\|254288110\|ref\|YP_003053858.1\| cation transport regulator [Escherichia coli BL21(DE3)], gi\|2539774... gi\|251784726, gi... - gi\|251784726\|ref\|YP_002999030.1\| hypothetical protein B21_01205 [Escherichia coli BL21], gi\|24237699... gi\|238862192, gi... - gi\|238900451\|ref\|YP_002926247.1\| putative cation regulator [Escherichia coli BW2952], gi\|238862192\|g... gi\|237705181, gi... - gi\|237705181\|ref\|ZP_04535662.1\| cation transport regulator chaB [Escherichia sp. 3_2_53FAA], gi\|2268... gi\|227836563, gi... - gi\|227886359\|ref\|ZP_04004164.1\| cation transport regulator [Escherichia coli 83972], gi\|227836563\|gb... gi\|15830976, gi\|... - gi\|15830976\|ref\|NP_309749.1\| cation transport regulator [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|110343040, gi... - gi\|110641448\|ref\|YP_669178.1\| cation transport regulator [Escherichia coli 536], gi\|110343040\|gb\|ABG... gi\|110614772, gi... - gi\|110805224\|ref\|YP_688744.1\| cation transport regulator [Shigella flexneri 5 str. 8401], gi\|1106147... gi\|1651605, gi\|8... - gi\|89108065\|ref\|AP_001845.1\| predicted cation regulator [Escherichia coli str. K-12 substr. W3110], ... gi\|91210440, gi\|... - gi\|91210440\|ref\|YP_540426.1\| cation transport regulator [Escherichia coli UTI89], gi\|91072014\|gb\|ABE... EG12402 - cation transport regulator / Accessory and regulatory protein for chaA gi\|24051521, gi\|... - gi\|24112616\|ref\|NP_707126.1\| cation transport regulator [Shigella flexneri 2a str. 301], gi\|24051521... CHAB_SHIFL - Cation transport regulator ChaB OS=Shigella flexneri GN=chaB PE=4 SV=1 gi\|30062741, gi\|... - gi\|30062741\|ref\|NP_836912.1\| cation transport regulator [Shigella flexneri 2a str. 2457T], gi\|300409... CHAB_ECOL6 - Cation transport regulator ChaB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ch... EG12402 - cation transport regulator / Accessory and regulatory protein for chaA CHAB_ECO57 - Cation transport regulator ChaB OS=Escherichia coli O157:H7 GN=chaB PE=4 SV=1 gi\|12514935, gi\|... - gi\|15801448\|ref\|NP_287465.1\| cation transport regulator [Escherichia coli O157:H7 EDL933], gi\|125149... CHAB_ECOL6 - Cation transport regulator ChaB OS=Escherichia coli O6 GN=chaB PE=4 SV=1	100.0	[0..1]	[75..1]
gi\|76793159, gi\|... - gi\|76793159\|ref\|ZP_00775650.1\| ChaB [Pseudoalteromonas atlantica T6c], gi\|76591549\|gb\|EAO67748.1\| Ch...	100.0	[0..1]	[74..1]
gi\|157802014, gi... - gi\|157826710\|ref\|YP_001495774.1\| cation transport regulator ChaB [Rickettsia bellii OSU 85-389], gi\|...	98.0	[0..1]	[73..1]
gi\|67005011, gi\|... - gi\|67459478\|ref\|YP_247102.1\| cation transport regulator ChaB [Rickettsia felis URRWXCal2], gi\|670050...	95.0	[0..1]	[75..1]
gi\|218351465, gi... - gi\|218694733\|ref\|YP_002402400.1\| cation transport regulator [Escherichia coli 55989], gi\|218351465\|e... gi\|209918461, gi... - gi\|209918461\|ref\|YP_002292545.1\| cation transport regulator [Escherichia coli SE11], gi\|209911720\|db... gi\|218360540, gi... - gi\|218553772\|ref\|YP_002386685.1\| cation transport regulator [Escherichia coli IAI1], gi\|218360540\|em... gi\|75257125, gi\|... - gi\|75257125\|ref\|ZP_00728661.1\| COG4572: Putative cation transport regulator [Escherichia coli E22], ... gi\|193069960, gi... - gi\|75235271\|ref\|ZP_00719508.1\| COG4572: Putative cation transport regulator [Escherichia coli E11001... gi\|75230221, gi\|... - gi\|75230221\|ref\|ZP_00716722.1\| COG4572: Putative cation transport regulator [Escherichia coli B7A], ... gi\|157158720, gi... - gi\|75190271\|ref\|ZP_00703538.1\| COG4572: Putative cation transport regulator [Escherichia coli E24377... gi\|75179184, gi\|... - gi\|75179184\|ref\|ZP_00699202.1\| COG4572: Putative cation transport regulator [Shigella boydii BS512],...	95.0	[0..1]	[75..1]
gi\|77954157, gi\|... - gi\|77954157\|ref\|ZP_00818556.1\| cation transport regulator [Marinobacter aquaeolei VT8], gi\|77866912\|...	94.0	[0..1]	[74..1]
gi\|194425937, gi... - gi\|75212654\|ref\|ZP_00712652.1\| COG4572: Putative cation transport regulator [Escherichia coli B171],...	91.0	[0..1]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYKAKSDLP DNVRNVLPAH AQDIYKEAFN SAWEQYKDKA DRRDDASREE TAHKVAWAAV  60
   61 KNDYEKGEDD KWHKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1sg7A
Description:	NMR solution structure of the putative cation transport regulator ChaB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits