YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16503407, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	765 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16503407, gi|....

Description	E-value	Query Range	Subject Range
BGLX_SALTY - Periplasmic beta-glucosidase OS=Salmonella typhimurium GN=bglX PE=3 SV=2 BGLX_SALTY - Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bglX... lcl\|NC_016856.1_... - [gene=bglX] [protein=periplasmic beta-D-glucoside glucohydrolase] [protein_id=YP_005238209.1] [locat... BGLX_SALTY - Periplasmic beta-glucosidase OS=Salmonella typhimurium GN=bglX PE=3 SV=2	0.0	[1..765]	[1..765]
gi\|62128385, gi\|... - gi\|62180752\|ref\|YP_217169.1\| beta-D-glucoside glucohydrolase, periplasmic [Salmonella enterica subsp...	0.0	[1..765]	[1..765]
gi\|1483154 - gi\|1483154\|dbj\|BAA13102.1\| T-cell inhibitor(STI) [Salmonella enterica subsp. enterica serovar Typhim... gi\|1483154\|dbj\|B... - T-cell inhibitor(STI) [Salmonella typhimurium]	0.0	[1..765]	[1..765]
gi\|110642341, gi... - gi\|110642341\|ref\|YP_670071.1\| periplasmic beta-glucosidase precursor [Escherichia coli 536], gi\|1103...	0.0	[1..765]	[25..789]
gi\|117624335, gi... - gi\|117624335\|ref\|YP_853248.1\| beta-D-glucoside glucohydrolase-like protein [Escherichia coli APEC O1... gi\|237704595, gi... - gi\|237704595\|ref\|ZP_04535076.1\| periplasmic beta-glucosidase [Escherichia sp. 3_2_53FAA], gi\|2269009...	0.0	[1..765]	[25..789]
gi\|74312656, gi\|... - gi\|74312656\|ref\|YP_311075.1\| beta-D-glucoside glucohydrolase, periplasmic [Shigella sonnei Ss046], g...	0.0	[1..765]	[1..765]
gi\|405863, gi\|744170 - gi\|744170\|prf\|\|2014253AD beta-glucosidase, gi\|405863\|gb\|AAA60495.1\| yohA [Escherichia coli]	0.0	[1..765]	[25..789]
gi\|26248511, gi\|... - gi\|26248511\|ref\|NP_754551.1\| periplasmic beta-glucosidase precursor [Escherichia coli CFT073], gi\|26...	0.0	[1..765]	[1..765]
gi\|82777386, gi\|... - gi\|82777386\|ref\|YP_403735.1\| beta-D-glucoside glucohydrolase, periplasmic [Shigella dysenteriae Sd19...	0.0	[1..765]	[1..765]
gi\|253323984, gi... - gi\|254288909\|ref\|YP_003054657.1\| beta-D-glucoside glucohydrolase, periplasmic [Escherichia coli BL21... gi\|242377774, gi... - gi\|251785501\|ref\|YP_002999805.1\| hypothetical protein B21_02020 [Escherichia coli BL21], gi\|24237777... gi\|169754478, gi... - gi\|170019550\|ref\|YP_001724504.1\| glycoside hydrolase family 3 protein [Escherichia coli ATCC 8739], ... gi\|253974048, gi... - gi\|254162147\|ref\|YP_003045255.1\| beta-D-glucoside glucohydrolase, periplasmic [Escherichia coli B st... gi\|194436057, gi... - gi\|83588114\|ref\|ZP_00926739.1\| COG1472: Beta-glucosidase-related glycosidases [Escherichia coli 101-...	0.0	[1..765]	[1..765]

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Predicted Domain #1

Region A:
Residues: [1-653]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLCSVGVA VSLAMQPALA ENLFGNHPLT PEARDAFVTD LLKKMTVDEK IGQLRLISVG  60
   61 PDNPKEAIRE MIKDGQVGAI FNTVTRQDIR QMQDQVMALS RLKIPLFFAY DVVHGQRTVF 120
  121 PISLGLASSF NLDAVRTVGR VSAYEAADDG LNMTWAPMVD VSRDPRWGRA SEGFGEDTYL 180
  181 TSIMGETMVK AMQGKSPADR YSVMTSVKHF AAYGAVEGGK EYNTVDMSSQ RLFNDYMPPY 240
  241 KAGLDAGSGA VMVALNSLNG TPATSDSWLL KDVLRDEWGF KGITVSDHGA IKELIKHGTA 300
  301 ADPEDAVRVA LKAGVDMSMA DEYYSKYLPG LIKSGKVTMA ELDDATRHVL NVKYDMGLFN 360
  361 DPYSHLGPKE SDPVDTNAES RLHRKEAREV ARESVVLLKN RLETLPLKKS GTIAVVGPLA 420
  421 DSQRDVMGSW SAAGVANQSV TVLAGIQNAV GDGAKILYAK GANITNDKDI VDFLNLYEEA 480
  481 VKIDPRSPQA MIDEAVQAAK QADVVVAVVG ESQGMAHEAS SRTNITIPQS QRDLITALKA 540
  541 TGKPLVLVLM NGRPLALVKE DQQADAILET WFAGTEGGNA IADVLFGDYN PSGKLPISFP 600
  601 RSVGQIPVYY SHLNTGRPYN PEKPNKYTSR YFDEANGPLY PFGYGLSYTT FTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	143.0
Match:	1ex1A
Description:	Beta-D-glucan exohydrolase, N-terminal domain; Beta-D-glucan exohydrolase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, hydrolyzing O-glycosyl compounds	3.03213713925196	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.00088487541785	bayes_pls_golite062009
catalytic activity	1.85569074294201	bayes_pls_golite062009
hydrolase activity	1.15751720508639	bayes_pls_golite062009
chitinase activity	0.700083867878222	bayes_pls_golite062009
glucosidase activity	0.528679164808812	bayes_pls_golite062009
hexosaminidase activity	0.220458268933622	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [654-765]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDVTLSSPTM QRDGKVTASV EVTNTGKREG ETVIQMYLQD VTASMSRPVK QLKGFEKITL  60
   61 KPGERKTVSF PIDIEALKFW NQQMKYDAEP GKFNVFIGVD SARVKQGSFE LL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.981
Match:	2e6jA
Description:	No description for 2e6jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: