YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29136704, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29136704, gi|....

Description	E-value	Query Range	Subject Range
ARND_SALTY - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella typhimur... YFBH_SALTY - Uncharacterized protein yfbH OS=Salmonella typhimurium GN=yfbH PE=4 SV=1 lcl\|NC_016856.1_... - [gene=STM14_2838] [protein=putative cytoplasmic protein] [protein_id=YP_005238374.1] [location=24596... gi\|197240306, gi... - gi\|197262051\|ref\|ZP_03162125.1\| polysaccharide deacetylase domain protein [Salmonella enterica subsp... ARND_SALTY - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella typhimur... gi\|167992636, gi... - gi\|205329220\|gb\|EDZ15984.1\| polysaccharide deacetylase domain protein [Salmonella enterica subsp. en...	0.0	[1..299]	[1..299]
ARND_SALCH - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella cholerae... ARND_SALCH - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella cholerae...	0.0	[1..299]	[1..299]
ARND_YERPG - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis bv.... ARND_YERP3 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pseudotube... ARND_YERPS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pseudotube... gi\|165927489, gi... - gi\|165927489\|ref\|ZP_02223321.1\| Polysaccharide deacetylase [Yersinia pestis biovar Orientalis str. F... ARND_YERPE - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis GN=... gi\|45441996, gi\|... - gi\|45441996\|ref\|NP_993535.1\| hypothetical protein YP_2206 [Yersinia pestis biovar Microtus str. 9100... gi\|22125813, gi\|... - gi\|22125813\|ref\|NP_669236.1\| hypothetical protein y1920 [Yersinia pestis KIM], gi\|21958740\|gb\|AAM854... gi\|16122639, gi\|... - gi\|218929507\|ref\|YP_002347382.1\| hypothetical protein YPO2419 [Yersinia pestis CO92], gi\|16122639\|re... ARND_YERPS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pseudotube... gi\|89105349, gi\|... - gi\|89105349\|ref\|ZP_01177870.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia pestis biova... ARND_YERPA - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis bv.... ARND_YERPN - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis bv.... gi\|149365673, gi... - gi\|149365673\|ref\|ZP_01887708.1\| hypothetical protein YPE_0841 [Yersinia pestis CA88-4125], gi\|149292... ARND_YERPP - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis (st... gi\|166210412, gi... - gi\|166210412\|ref\|ZP_02236447.1\| Polysaccharide deacetylase [Yersinia pestis biovar Antiqua str. B420... gi\|166011826, gi... - gi\|166011826\|ref\|ZP_02232724.1\| Polysaccharide deacetylase [Yersinia pestis biovar Antiqua str. E197... gi\|229837944, gi... - gi\|229837944\|ref\|ZP_04458103.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|167422175, gi... - gi\|167422175\|ref\|ZP_02313928.1\| Polysaccharide deacetylase [Yersinia pestis biovar Orientalis str. M... gi\|229895104, gi... - gi\|229895104\|ref\|ZP_04510280.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229701866\|gb\|EEO... gi\|167049604, gi... - gi\|167400751\|ref\|ZP_02306257.1\| Polysaccharide deacetylase [Yersinia pestis biovar Antiqua str. UG05... gi\|229898505, gi... - gi\|229898505\|ref\|ZP_04513650.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|167469207 - gi\|167469207\|ref\|ZP_02333911.1\| Polysaccharide deacetylase [Yersinia pestis FV-1] gi\|167056163, gi... - gi\|167424976\|ref\|ZP_02316729.1\| Polysaccharide deacetylase [Yersinia pestis biovar Mediaevalis str. ... ARND_YERPB - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pseudotube...	0.0	[1..296]	[1..297]
gi\|187771045, gi... - gi\|187771045\|gb\|EDU34889.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189362862, gi... - gi\|189362862\|gb\|EDU81281.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|168761303, gi... - gi\|189368316\|gb\|EDU86732.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189357672, gi... - gi\|189357672\|gb\|EDU76091.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|195935635 - gi\|195935635\|ref\|ZP_03081017.1\| hypothetical protein EscherichcoliO157_04112 [Escherichia coli O157:... gi\|168798428, gi... - gi\|189378933\|gb\|EDU97349.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189372836, gi... - gi\|189372836\|gb\|EDU91252.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|168780113, gi... - gi\|189002099\|gb\|EDU71085.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|188016047, gi... - gi\|188016047\|gb\|EDU54169.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|15832398, gi\|... - gi\|15832398\|ref\|NP_311171.1\| hypothetical protein ECs3144 [Escherichia coli O157:H7 str. Sakai], gi\|... ARND_ECO5E - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... gi\|208738883, gi... - gi\|208818760\|ref\|ZP_03259080.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... gi\|254593551, gi... - gi\|254794151\|ref\|YP_003078988.1\| hypothetical protein ECSP_3133 [Escherichia coli O157:H7 str. TW143... gi\|208734222, gi... - gi\|208812945\|ref\|ZP_03254274.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... gi\|208806624, gi... - gi\|208806624\|ref\|ZP_03248961.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... ARND_ECO57 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... gi\|209765344, gi... - pir\|\|G85865 hypothetical protein Z3514 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15802805, gi\|... - gi\|15802805\|ref\|NP_288832.1\| hypothetical protein Z3514 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|217319669, gi... - gi\|217327302\|ref\|ZP_03443385.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ...	0.0	[1..294]	[1..291]
ARND_PHOLL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Photorhabdus lumine... ARND_PHOLL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase arnD OS=Photorhabdus lumine...	0.0	[1..296]	[1..297]
ARND_SHIB3 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella boydii ser... ARND_SHIBS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella boydii ser...	0.0	[1..294]	[1..291]
gi\|194436355, gi... - gi\|83588242\|ref\|ZP_00926867.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli 101-... YFBH_ECOLI - Hypothetical protein yfbH - Escherichia coli ARND_SHIF8 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella flexneri s... ARND_ECOLC - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli (s... ARND_ECODH - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli (s... EG14092 - undecaprenyl phosphate-alpha-L-ara4FN deformylase / Undecaprenyl phosphate-aminoarabinose deformylas... gi\|253974168, gi... - gi\|254162267\|ref\|YP_003045375.1\| hypothetical protein ECB_02182 [Escherichia coli B str. REL606], gi... gi\|254289028, gi... - gi\|254289028\|ref\|YP_003054776.1\| hypothetical protein ECD_02182 [Escherichia coli BL21(DE3)], gi\|253... gi\|251785617, gi... - gi\|251785617\|ref\|YP_002999921.1\| hypothetical protein B21_02141 [Escherichia coli BL21], gi\|24237789... gi\|238860508, gi... - gi\|238901430\|ref\|YP_002927226.1\| hypothetical protein BWG_2029 [Escherichia coli BW2952], gi\|2388605... gi\|124501896, gi... - gi\|124526425\|ref\|ZP_01698378.1\| polysaccharide deacetylase [Escherichia coli B], gi\|124501896\|gb\|EAY... EG14092 - undecaprenyl phosphate-alpha-L-ara4FN deformylase / Undecaprenyl phosphate-aminoarabinose deformylas... gi\|75512732, gi\|... - gi\|75512732\|ref\|ZP_00735234.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli 5363... gi\|192932064, gi... - gi\|75259719\|ref\|ZP_00731021.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli E22]... gi\|85675325, gi\|... - gi\|89109073\|ref\|AP_002853.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... ARND_SHISS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella sonnei (st... gi\|194427092, gi... - gi\|75211664\|ref\|ZP_00711743.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli B171... ARND_ECOHS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O9... gi\|193068229, gi... - gi\|75238044\|ref\|ZP_00722049.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli E110... gi\|191166503, gi... - gi\|75230358\|ref\|ZP_00716848.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli B7A]...	0.0	[1..294]	[1..291]
ARND_ECO24 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1...	0.0	[1..294]	[1..291]
gi\|75243071, gi\|... - gi\|75243071\|ref\|ZP_00726777.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli F11]... ARND_ECOL5 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O6... ARND_ECO81 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O8...	0.0	[1..298]	[1..295]
ARND_ECOUT - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli (s... ARND_ECO45 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O4... sp\|B7UFR8\|ARND_ECO27 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... ARND_ECOK1 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... ARND_ECO27 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... ARND_ECOL6 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O6... gi\|226901100, gi... - gi\|237704734\|ref\|ZP_04535215.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227835665, gi... - gi\|227887315\|ref\|ZP_04005120.1\| polysaccharide deacetylase domain protein [Escherichia coli 83972], ... ARND_ECOL6 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O6...	0.0	[1..294]	[1..291]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKVGLRIDV DTLRGTREGV PRLLATLHRH GVQASFFFSV GPDNMGRHLW RLIKPRFLWK  60
   61 MLRSNAASLY GWDILLAGTA WPGKNIGNAN AGIIRETATY HETGLHAWDH HAWQTHSGHW 120
  121 SIRQLEEDIA RGITALEAII GKPVTCSAAA GWRADGRVVR AKEPFNLRYN SDCRGTTLFR 180
  181 PLLMPGQTGT PQIPVTLPTW DEVIGPAVQA QSFNTWIISR MLQDKGTPVY TIHAEVEGIV 240
  241 HQPLFEDLLV RARDAGITFC PLGELLPASP ESLPLGQIVR GHIPGREGWL GCQQAVSAS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.96
Match:	2cc0A
Description:	Family 4 carbohydrate esterase from Streptomyces lividans in complex with acetate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.47308138434183	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	0.692308042572561	bayes_pls_golite062009
deacetylase activity	0.566751893913574	bayes_pls_golite062009
hydrolase activity	0.510541608273271	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.485046211704246	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: