YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29138691, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29138691, gi|....

Description	E-value	Query Range	Subject Range
Y1325_METJA, YD2... - (Q58721) Putative HTH-type transcriptional regulator MJ1325, Uncharacterized HTH-type transcriptiona... Y1325_METJA - Uncharacterized HTH-type transcriptional regulator MJ1325 OS=Methanocaldococcus jannaschii (strain A... gi\|255051040, gi... - gi\|255051040\|ref\|ZP_05303303.1\| transcriptional regulator, ArsR family [Methanocaldococcus vulcanius...	8.0E-24	[8..96]	[1..89]
gi\|72161958, gi\|... - gi\|72161958\|ref\|YP_289615.1\| ArsR family transcriptional regulator [Thermobifida fusca YX], gi\|71915...	6.0E-22	[8..99]	[27..120]
gi\|82778036, gi\|... - gi\|82778036\|ref\|YP_404385.1\| hypothetical protein SDY_2857 [Shigella dysenteriae Sd197], gi\|81242184...	2.0E-21	[1..99]	[1..99]
gi\|16421345, gi\|... - gi\|16766108\|ref\|NP_461723.1\| putative regulatory protein [Salmonella typhimurium LT2], gi\|16421345\|g... gi\|206709868, gi... - gi\|207858065\|ref\|YP_002244716.1\| putative ArsR-family regulatory protein [Salmonella enterica subsp.... gi\|204929681, gi... - gi\|204929681\|ref\|ZP_03220755.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=STM14_3374] [protein=putative regulatory protein] [protein_id=YP_005238889.1] [location=296627... gi\|205273529, gi... - gi\|205353748\|ref\|YP_002227549.1\| putative ArsR-family regulatory protein [Salmonella enterica subsp.... gi\|197264482, gi... - gi\|197264482\|ref\|ZP_03164556.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serova... gi\|198244582, gi... - gi\|198244582\|ref\|YP_002216769.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serov... gi\|194444472, gi... - gi\|194444472\|ref\|YP_002042039.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serov... gi\|194469448, gi... - gi\|194469448\|ref\|ZP_03075432.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serova... gi\|168233754, gi... - gi\|205332198\|gb\|EDZ18962.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serovar Ke... gi\|168262098, gi... - gi\|205349310\|gb\|EDZ35941.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serovar Ha... gi\|56129012, gi\|... - gi\|56414755\|ref\|YP_151830.1\| putative transcriptional regulator [Salmonella enterica subsp. enterica... gi\|205329260, gi... - gi\|205329260\|gb\|EDZ16024.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serovar 4,... gi\|238909567 - gi\|238909567\|ref\|ZP_04653404.1\| putative ArsR-family regulatory protein [Salmonella enterica subsp. ...	2.0E-21	[1..99]	[1..99]
gi\|199605063, gi... - gi\|200387965\|ref\|ZP_03214577.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serova... gi\|197251611, gi... - gi\|197251611\|ref\|YP_002147693.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serov... gi\|194447388, gi... - gi\|194447388\|ref\|YP_002046757.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serov... gi\|205340772, gi... - gi\|205340772\|gb\|EDZ27536.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serovar We... gi\|168464087, gi... - gi\|195633307\|gb\|EDX51721.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serovar Ne... gi\|168244591, gi... - gi\|205336545\|gb\|EDZ23309.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serovar He... gi\|167552707, gi... - gi\|205322716\|gb\|EDZ10555.1\| regulatory protein, ArsR [Salmonella enterica subsp. enterica serovar Sa... gi\|161365052, gi... - gi\|161615688\|ref\|YP_001589653.1\| hypothetical protein SPAB_03473 [Salmonella enterica subsp. enteric... gi\|62181299, gi\|... - gi\|62181299\|ref\|YP_217716.1\| ArsR family regulatory protein [Salmonella enterica subsp. enterica ser... gi\|224584579, gi... - gi\|224584579\|ref\|YP_002638377.1\| putative transcriptional regulator [Salmonella enterica subsp. ente...	2.0E-21	[1..99]	[1..99]
gi\|46204334 - gi\|46204334\|ref\|ZP_00050136.2\| COG0640: Predicted transcriptional regulators [Magnetospirillum magne...	5.0E-21	[9..96]	[39..128]
gi\|218366426, gi... - gi\|218559657\|ref\|YP_002392570.1\| putative DNA-binding transcriptional regulator [Escherichia coli S8... gi\|218690793, gi... - gi\|218690793\|ref\|YP_002399005.1\| putative DNA-binding transcriptional regulator [Escherichia coli ED... gi\|218352996, gi... - gi\|218696264\|ref\|YP_002403931.1\| putative DNA-binding transcriptional regulator [Escherichia coli 55... gi\|218701160, gi... - gi\|218701160\|ref\|YP_002408789.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|218706165, gi... - gi\|218706165\|ref\|YP_002413684.1\| putative DNA-binding transcriptional regulator [Escherichia coli UM... gi\|89109460, gi\|... - gi\|89109460\|ref\|AP_003240.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|91212024, gi\|... - gi\|91212024\|ref\|YP_542010.1\| transcriptional regulator [Escherichia coli UTI89], gi\|91073598\|gb\|ABE0... gi\|170019081, gi... - gi\|170019081\|ref\|YP_001724035.1\| ArsR family transcriptional regulator [Escherichia coli ATCC 8739],... gi\|169890089, gi... - gi\|170082254\|ref\|YP_001731574.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 s... gi\|209913370, gi... - gi\|209920111\|ref\|YP_002294195.1\| hypothetical protein ECSE_2920 [Escherichia coli SE11], gi\|20991337... EG13524 - tributyltin-inducible repressor of ygaVP / Tributyltin-inducible repressor of ygaVP, function unknow... YGAV_ECOLI - Hypothetical transcriptional regulator ygaV - Escherichia coli gi\|218361983, gi... - gi\|218555215\|ref\|YP_002388128.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... EG13524 - tributyltin-inducible repressor of ygaVP / Tributyltin-inducible repressor of ygaVP, function unknow... gi\|75255970, gi\|... - gi\|75255970\|ref\|ZP_00727694.1\| COG0640: Predicted transcriptional regulators [Escherichia coli E22],... gi\|188491928, gi... - gi\|75513236\|ref\|ZP_00735678.1\| COG0640: Predicted transcriptional regulators [Escherichia coli 53638... gi\|191167106, gi... - gi\|75229748\|ref\|ZP_00716278.1\| COG0640: Predicted transcriptional regulators [Escherichia coli B7A],... gi\|192955658, gi... - gi\|75234116\|ref\|ZP_00718527.1\| COG0640: Predicted transcriptional regulators [Escherichia coli E1100... gi\|73856715, gi\|... - gi\|74313238\|ref\|YP_311657.1\| hypothetical protein SSON_2811 [Shigella sonnei Ss046], gi\|73856715\|gb\|... gi\|81246665, gi\|... - gi\|82545254\|ref\|YP_409201.1\| hypothetical protein SBO_2852 [Shigella boydii Sb227], gi\|81246665\|gb\|A... gi\|194418705, gi... - gi\|83569972\|ref\|ZP_00921420.1\| COG0640: Predicted transcriptional regulators [Shigella dysenteriae 1... gi\|157162117, gi... - gi\|75196648\|ref\|ZP_00706718.1\| COG0640: Predicted transcriptional regulators [Escherichia coli HS], ... gi\|75210872, gi\|... - gi\|75210872\|ref\|ZP_00710996.1\| COG0640: Predicted transcriptional regulators [Escherichia coli B171]... gi\|83585166, gi\|... - gi\|83585166\|ref\|ZP_00923817.1\| COG0640: Predicted transcriptional regulators [Escherichia coli 101-1... gi\|75187392, gi\|... - gi\|75187392\|ref\|ZP_00700659.1\| COG0640: Predicted transcriptional regulators [Escherichia coli E2437... gi\|254162604, gi... - gi\|254162604\|ref\|YP_003045712.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|254037709, gi... - gi\|254037709\|ref\|ZP_04871767.1\| transcriptional regulator [Escherichia sp. 1_1_43], gi\|226839333\|gb\|... gi\|253978672, gi... - gi\|254289365\|ref\|YP_003055113.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|251785956, gi... - gi\|251785956\|ref\|YP_003000260.1\| hypothetical protein B21_02487 [Escherichia coli BL21], gi\|24237822... gi\|238862318, gi... - gi\|238901811\|ref\|YP_002927607.1\| putative DNA-binding transcriptional regulator [Escherichia coli BW... gi\|226899755, gi... - gi\|237706715\|ref\|ZP_04537196.1\| transcriptional regulator [Escherichia sp. 3_2_53FAA], gi\|226899755\|... gi\|117624902, gi... - gi\|117624902\|ref\|YP_853815.1\| DNA-binding transcriptional regulator [Escherichia coli APEC O1], gi\|1... gi\|124500931, gi... - gi\|124528039\|ref\|ZP_01699392.1\| transcriptional regulator, ArsR family [Escherichia coli B], gi\|1245...	5.0E-21	[1..99]	[1..99]
gi\|61102710 - gi\|61102710\|gb\|AAX37827.1\| pFQ25.11c [Streptomyces sp. F2]	6.0E-21	[1..94]	[20..114]
gi\|208726573, gi... - gi\|208806772\|ref\|ZP_03249109.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str... gi\|208812286, gi... - gi\|208812286\|ref\|ZP_03253615.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str... gi\|208741391, gi... - gi\|208821268\|ref\|ZP_03261588.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str... gi\|209397295, gi... - gi\|209397295\|ref\|YP_002272131.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 st... gi\|168778645, gi... - gi\|189003587\|gb\|EDU72573.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str. EC... gi\|168789569, gi... - gi\|189370873\|gb\|EDU89289.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str. EC... gi\|168800548, gi... - gi\|189377161\|gb\|EDU95577.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str. EC... gi\|195938419 - gi\|195938419\|ref\|ZP_03083801.1\| hypothetical protein EscherichcoliO157_18635 [Escherichia coli O157:... gi\|168755408, gi... - gi\|189357335\|gb\|EDU75754.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str. EC... gi\|189367232, gi... - gi\|189367232\|gb\|EDU85648.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str. EC... gi\|189362038, gi... - gi\|189362038\|gb\|EDU80457.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str. EC... gi\|168774804, gi... - gi\|187769525\|gb\|EDU33369.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str. EC... gi\|188014954, gi... - gi\|188014954\|gb\|EDU53076.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str. EC... gi\|15832782, gi\|... - gi\|15832782\|ref\|NP_311555.1\| hypothetical protein ECs3528 [Escherichia coli O157:H7], gi\|13362999\|db... gi\|209762330, gi... - pir\|\|H91069 hypothetical protein ECs3528 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|12517101, gi\|... - gi\|15803185\|ref\|NP_289217.1\| hypothetical protein Z3966 [Escherichia coli O157:H7 EDL933], gi\|125171... gi\|15832782, gi\|... - gi\|15832782\|ref\|NP_311555.1\| hypothetical protein ECs3528 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217320259, gi... - gi\|217327892\|ref\|ZP_03443975.1\| transcriptional regulator, ArsR family [Escherichia coli O157:H7 str... gi\|254594011, gi... - gi\|254794611\|ref\|YP_003079448.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O...	6.0E-21	[1..99]	[1..99]
gi\|25400820 - pir\|\|H87603 transcription regulator, ArsR family [imported] - Caulobacter crescentus gi\|16127096, gi\|... - gi\|16127096\|ref\|NP_421660.1\| ArsR family transcriptional regulator [Caulobacter crescentus CB15], gi... gi\|221235893, gi... - gi\|221235893\|ref\|YP_002518330.1\| transcriptional regulator, ArsR family [Caulobacter crescentus NA10...	8.0E-21	[8..99]	[16..106]

Back

Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELEKLQAS AEQAAALLKA MSHPKRLLIL CMLCGSPKTS AGELARITGL SPSATSQHLA  60
   61 RMREEGLIDS QRDAQRIHYF IKNEAVNTLI ATLKNLYCP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	2jscA
Description:	No description for 2jscA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits