YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29138750, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29138750, gi|....

Description	E-value	Query Range	Subject Range
gi\|117624960, gi... - gi\|117624960\|ref\|YP_853948.1\| hydrogenase isoenzymes formation protein [Escherichia coli APEC O1], g... gi\|124528094, gi... - gi\|124528094\|ref\|ZP_01699447.1\| hydrogenase assembly chaperone hypC/hupF [Escherichia coli B], gi\|12... gi\|24114019, gi\|... - gi\|24114019\|ref\|NP_708529.1\| hydrogenase isoenzymes formation protein [Shigella flexneri 2a str. 301... HYPC_SHIFL - Hydrogenase isoenzymes formation protein HypC OS=Shigella flexneri GN=hypC PE=3 SV=1 gi\|30064082, gi\|... - gi\|30064082\|ref\|NP_838253.1\| hydrogenase isoenzymes formation protein [Shigella flexneri 2a str. 245... EG10485 - hydrogenase maturation protein / Hydrogenase 3 chaperone-type protein; required for Hyd-3 metallocen... HYPC_ECOL6 - Hydrogenase isoenzymes formation protein HypC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928... EG10485 - hydrogenase maturation protein / Hydrogenase 3 chaperone-type protein; required for Hyd-3 metallocen... HYPC_ECO57 - Hydrogenase isoenzymes formation protein HypC OS=Escherichia coli O157:H7 GN=hypC PE=3 SV=1 gi\|218353054, gi... - gi\|218696322\|ref\|YP_002403989.1\| hydrogenase assembly chaperone [Escherichia coli 55989], gi\|2183530... gi\|12517180, gi\|... - gi\|15803246\|ref\|NP_289278.1\| hydrogenase isoenzymes formation protein [Escherichia coli O157:H7 EDL9... gi\|218690852, gi... - gi\|218690852\|ref\|YP_002399064.1\| hydrogenase assembly chaperone [Escherichia coli ED1a], gi\|21842841... gi\|218706222, gi... - gi\|218706222\|ref\|YP_002413741.1\| hydrogenase assembly chaperone [Escherichia coli UMN026], gi\|218433... gi\|218701220, gi... - gi\|218701220\|ref\|YP_002408849.1\| hydrogenase assembly chaperone [Escherichia coli IAI39], gi\|2183712... gi\|81242242, gi\|... - gi\|82778094\|ref\|YP_404443.1\| hydrogenase isoenzymes formation protein [Shigella dysenteriae Sd197], ... gi\|89109515, gi\|... - gi\|89109515\|ref\|AP_003295.1\| protein required for maturation of hydrogenases 1 and 3 [Escherichia co... gi\|188487438, gi... - gi\|75512362\|ref\|ZP_00734914.1\| COG0298: Hydrogenase maturation factor [Escherichia coli 53638], gi\|1... gi\|73856772, gi\|... - gi\|74313295\|ref\|YP_311714.1\| hydrogenase isoenzymes formation protein [Shigella sonnei Ss046], gi\|73... gi\|157067855, gi... - gi\|75196703\|ref\|ZP_00706773.1\| COG0298: Hydrogenase maturation factor [Escherichia coli HS], gi\|1571... gi\|194414061, gi... - gi\|75210929\|ref\|ZP_00711053.1\| COG0298: Hydrogenase maturation factor [Escherichia coli B171], gi\|19... gi\|194422131, gi... - gi\|83585613\|ref\|ZP_00924256.1\| COG0298: Hydrogenase maturation factor [Escherichia coli 101-1], gi\|1... gi\|157080194, gi... - gi\|75187450\|ref\|ZP_00700717.1\| COG0298: Hydrogenase maturation factor [Escherichia coli E24377A], gi... gi\|75241672, gi\|... - gi\|75241672\|ref\|ZP_00725509.1\| COG0298: Hydrogenase maturation factor [Escherichia coli F11], gi\|191... gi\|75256930, gi\|... - gi\|75256930\|ref\|ZP_00728506.1\| COG0298: Hydrogenase maturation factor [Escherichia coli E22], gi\|193... gi\|191166812, gi... - gi\|75230066\|ref\|ZP_00716576.1\| COG0298: Hydrogenase maturation factor [Escherichia coli B7A], gi\|191... gi\|75235677, gi\|... - gi\|75235677\|ref\|ZP_00719851.1\| COG0298: Hydrogenase maturation factor [Escherichia coli E110019], gi... gi\|189357353, gi... - gi\|189357353\|gb\|EDU75772.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 str. ... gi\|168749945, gi... - gi\|188015800\|gb\|EDU53922.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 str. ... HYPC_ECOL6 - Hydrogenase isoenzymes formation protein hypC OS=Escherichia coli O6 GN=hypC PE=3 SV=1 gi\|189362121, gi... - gi\|189362121\|gb\|EDU80540.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 str. ... gi\|83569907, gi\|... - gi\|83569907\|ref\|ZP_00921355.1\| COG0298: Hydrogenase maturation factor [Shigella dysenteriae 1012], g... gi\|168762871, gi... - gi\|189366915\|gb\|EDU85331.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 str. ... gi\|189003459, gi... - gi\|189003459\|gb\|EDU72445.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 str. ... gi\|168774738, gi... - gi\|187769528\|gb\|EDU33372.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 str. ... gi\|209398163, gi... - gi\|209398163\|ref\|YP_002272192.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 ... gi\|208739920, gi... - gi\|208819797\|ref\|ZP_03260117.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 s... gi\|215488044, gi... - gi\|215488044\|ref\|YP_002330475.1\| hydrogenase assembly chaperone [Escherichia coli O127:H6 str. E2348... gi\|209920167, gi... - gi\|209920167\|ref\|YP_002294251.1\| hydrogenase assembly chaperone [Escherichia coli SE11], gi\|20991342... gi\|218547764, gi... - gi\|218547764\|ref\|YP_002381555.1\| hydrogenase assembly chaperone [Escherichia fergusonii ATCC 35469],... gi\|217327710, gi... - gi\|217327710\|ref\|ZP_03443793.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 s... gi\|218559718, gi... - gi\|218559718\|ref\|YP_002392631.1\| hydrogenase assembly chaperone [Escherichia coli S88], gi\|218366487... gi\|218555272, gi... - gi\|218555272\|ref\|YP_002388185.1\| hydrogenase assembly chaperone [Escherichia coli IAI1], gi\|21836204... gi\|168800190, gi... - gi\|189377502\|gb\|EDU95918.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 str. ... gi\|168787985, gi... - gi\|189372206\|gb\|EDU90622.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 str. ... gi\|169890139, gi... - gi\|170082304\|ref\|YP_001731624.1\| hypothetical protein ECDH10B_2896 [Escherichia coli str. K-12 subst... gi\|170019026, gi... - gi\|170019026\|ref\|YP_001723980.1\| hydrogenase assembly chaperone [Escherichia coli ATCC 8739], gi\|169... gi\|195938480 - gi\|195938480\|ref\|ZP_03083862.1\| hydrogenase isoenzymes formation protein [Escherichia coli O157:H7 s... gi\|170682922, gi... - gi\|170682922\|ref\|YP_001744877.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli SMS-3-5]... gi\|208812942, gi... - gi\|208812942\|ref\|ZP_03254271.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 s... gi\|208806633, gi... - gi\|208806633\|ref\|ZP_03248970.1\| hydrogenase assembly chaperone HypC/HupF [Escherichia coli O157:H7 s... HYPC_ECOLI - Hydrogenase isoenzymes formation protein hypC - Escherichia coli gi\|91212088, gi\|... - gi\|91212088\|ref\|YP_542074.1\| hydrogenase isoenzymes formation protein [Escherichia coli UTI89], gi\|9... gi\|13363055, gi\|... - gi\|15832838\|ref\|NP_311611.1\| hydrogenase assembly chaperone [Escherichia coli O157:H7 str. Sakai], g... gi\|110344443, gi... - gi\|110642851\|ref\|YP_670581.1\| hydrogenase assembly chaperone [Escherichia coli 536], gi\|110344443\|gb... gi\|227888266, gi... - gi\|227888266\|ref\|ZP_04006071.1\| hydrogenase isoenzyme formation protein [Escherichia coli 83972], gi... gi\|238863317, gi... - gi\|238901865\|ref\|YP_002927661.1\| protein required for maturation of hydrogenases 1 and 3 [Escherichi... gi\|251786011, gi... - gi\|251786011\|ref\|YP_003000315.1\| hypothetical protein B21_02543 [Escherichia coli BL21], gi\|24237828... gi\|253978727, gi... - gi\|254289420\|ref\|YP_003055168.1\| HypC [Escherichia coli BL21(DE3)], gi\|253978727\|gb\|ACT44397.1\| HypC... gi\|254162659, gi... - gi\|254162659\|ref\|YP_003045767.1\| HypC [Escherichia coli B str. REL606], gi\|253974560\|gb\|ACT40231.1\| ... gi\|254794669, gi... - gi\|254794669\|ref\|YP_003079506.1\| protein required for maturation of hydrogenases 1 and 3 [Escherichi...	114.0	[0..1]	[90..1]
gi\|187427883, gi... - gi\|75176411\|ref\|ZP_00696555.1\| COG0298: Hydrogenase maturation factor [Shigella boydii BS512], gi\|18... gi\|81246610, gi\|... - gi\|82545199\|ref\|YP_409146.1\| hydrogenase isoenzymes formation protein [Shigella boydii Sb227], gi\|81...	113.0	[0..1]	[90..1]
gi\|110806645, gi... - gi\|110806645\|ref\|YP_690165.1\| hydrogenase isoenzymes formation protein [Shigella flexneri 5 str. 840...	113.0	[0..1]	[90..1]
gi\|186680890, gi... - gi\|53688951\|ref\|ZP_00112364.2\| COG0298: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	109.0	[0..1]	[80..1]
gi\|75910799, gi\|... - gi\|75910799\|ref\|YP_325095.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Anabaena variabil...	107.0	[0..1]	[82..1]
gi\|17130040, gi\|... - gi\|17228190\|ref\|NP_484738.1\| hydrogenase expression/formation protein [Nostoc sp. PCC 7120], gi\|1713... gi\|25313751 - pir\|\|AE1893 hydrogenase expression/formation protein [imported] - Nostoc sp. (strain PCC 7120)	105.0	[0..1]	[79..1]
gi\|110165672, gi... - gi\|71676652\|ref\|ZP_00674393.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Trichodesmium e...	103.0	[0..1]	[79..1]
gi\|78518017, gi\|... - gi\|78694901\|ref\|ZP_00859414.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Bradyrhizobium ...	101.0	[0..1]	[85..1]
gi\|238727226, gi... - gi\|77978841\|ref\|ZP_00834265.1\| COG0298: Hydrogenase maturation factor [Yersinia intermedia ATCC 2990...	100.0	[0..1]	[85..1]
gi\|72537500 - gi\|72537500\|gb\|AAZ73677.1\| HypC [Lyngbya majuscula CCAP 1446/4]	99.0	[0..1]	[78..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCIGVPGQIR AIDGNQAKVD VCGIQRDVDL TLVGSCDENG QPRLGQWVLV HVGFAMSVIN  60
   61 EAEARDTLDA LQNMFDVEPD VGALLYGEER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.09691
Match:	2ot2A
Description:	No description for 2ot2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits