YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29139213, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29139213, gi|....

Description	E-value	Query Range	Subject Range
gi\|84317886 - gi\|84317886\|ref\|ZP_00966321.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|107104347 - gi\|107104347\|ref\|ZP_01368265.1\| hypothetical protein PaerPA_01005422 [Pseudomonas aeruginosa PACS2] gi\|53726706 - gi\|53726706\|ref\|ZP_00347670.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	3.0E-47	[2..217]	[41..256]
gi\|84324051 - gi\|84324051\|ref\|ZP_00972116.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	3.0E-47	[2..217]	[41..256]
gi\|77973383 - gi\|77973383\|ref\|ZP_00828931.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	8.0E-47	[1..217]	[1..217]
gi\|50119276, gi\|... - gi\|50119276\|ref\|YP_048443.1\| isoprenoid biosynthesis protein [Pectobacterium atrosepticum SCRI1043],...	1.0E-46	[1..217]	[1..217]
gi\|16421885, gi\|... - gi\|16766622\|ref\|NP_462237.1\| isoprenoid biosynthesis protein [Salmonella typhimurium LT2], gi\|164218... gi\|205354228, gi... - gi\|205354228\|ref\|YP_002228029.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|207858575, gi... - gi\|207858575\|ref\|YP_002245226.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|205343515, gi... - gi\|205343515\|gb\|EDZ30279.1\| enhancing lycopene biosynthesis protein 2 [Salmonella enterica subsp. en... lcl\|NC_016856.1_... - [gene=yhbL] [protein=isoprenoid biosynthesis protein] [protein_id=YP_005239507.1] [location=compleme... gi\|199603809, gi... - gi\|200386711\|ref\|ZP_03213323.1\| enhancing lycopene biosynthesis protein 2 [Salmonella enterica subsp... gi\|161365701, gi... - gi\|161616337\|ref\|YP_001590302.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|205327629, gi... - gi\|205327629\|gb\|EDZ14393.1\| enhancing lycopene biosynthesis protein 2 [Salmonella enterica subsp. en...	1.0E-46	[1..217]	[1..217]
gi\|77977062, gi\|... - gi\|77977062\|ref\|ZP_00832522.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	3.0E-46	[1..217]	[1..217]
gi\|49078134 - gi\|49078134\|gb\|AAT49754.1\| PA5245 [synthetic construct]	3.0E-46	[2..217]	[3..218]
gi\|218774576, gi... - gi\|218894347\|ref\|YP_002443217.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|9951555, gi\|1... - gi\|9951555\|gb\|AAG08630.1\|AE004937_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|116053392, gi... - gi\|116053392\|ref\|YP_793717.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [Pse... gi\|11348313 - pir\|\|G82989 conserved hypothetical protein PA5245 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|194549043, gi... - gi\|254238058\|ref\|ZP_04931381.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19...	3.0E-46	[2..217]	[3..218]
gi\|227835326, gi... - gi\|227887930\|ref\|ZP_04005735.1\| isoprenoid biosynthesis protein [Escherichia coli 83972], gi\|2278353... gi\|26249795, gi\|... - gi\|26249795\|ref\|NP_755835.1\| isoprenoid biosynthesis protein [Escherichia coli CFT073], gi\|26110223\|... gi\|191174422, gi... - gi\|75236488\|ref\|ZP_00720583.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|110643450, gi... - gi\|110643450\|ref\|YP_671180.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [Esc...	3.0E-46	[1..217]	[1..217]
gi\|62129468, gi\|... - gi\|62181835\|ref\|YP_218252.1\| isoprenoid biosynthesis protein [Salmonella enterica subsp. enterica se...	3.0E-46	[1..217]	[1..217]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIGVVLSG CGVYDGTEIH EAVLTLLAIA RSGAQAICFA PDKPQADVIN HLTGEAMAET  60
   61 RNVLIEAARI TRGDIRPLSQ AQPEELDALI VPGGFGAAKN LSNFASKGSE CRVDSDVVAL 120
  121 AKAMHQSGKP LGFICIAPAM LPKIFDFPLR LTIGTDIDTA EVLEEMGAEH VPCPVDDIVV 180
  181 DEDNKVVTTP AYMLAQDIAQ AASGIDKLVS RVLVLAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1vhqA
Description:	Crystal structure of enhancing lycopene biosynthesis protein 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.30391542469987	bayes_pls_golite062009
protein binding	1.06565672438103	bayes_pls_golite062009
ligase activity	0.606811845310629	bayes_pls_golite062009
nucleic acid binding	0.59602498623822	bayes_pls_golite062009
binding	0.588714599255874	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: