YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16504483, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16504483, gi|....

Description	E-value	Query Range	Subject Range
gi\|56480444, gi\|... - gi\|56480444\|ref\|NP_709624.2\| hypothetical protein SF3896 [Shigella flexneri 2a str. 301], gi\|5638399... gi\|30064885, gi\|... - gi\|30064885\|ref\|NP_839056.1\| hypothetical protein S3859 [Shigella flexneri 2a str. 2457T], gi\|300431...	1.0E-46	[19..148]	[7..136]
gi\|254039030, gi... - gi\|254039030\|ref\|ZP_04873081.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683872... gi\|148217, gi\|14... - pir\|\|S30708 hypothetical 15.8K protein (corA-rarD intergenic region) - Escherichia coli (strain K-12... gi\|1790251, gi\|1... - gb\|AAC76821.1\| orf, hypothetical protein; putative membrane protein [Escherichia coli K12], gi\|1613... gi\|148217\|gb\|AAA... - f138 [Escherichia coli]	5.0E-46	[19..148]	[7..136]
gi\|110617038, gi... - gi\|110807490\|ref\|YP_691010.1\| hypothetical protein SFV_3680 [Shigella flexneri 5 str. 8401], gi\|1106...	3.0E-45	[19..148]	[7..134]
YIGG_ECOLI - Inner membrane protein yigG - Escherichia coli EG11465 - PRK11371 family inner membrane protein / Required for swarming phenotype, function unknown; inner me... gi\|170022160, gi... - gi\|170022160\|ref\|YP_001727114.1\| hypothetical protein EcolC_4190 [Escherichia coli ATCC 8739], gi\|16... gi\|170083299, gi... - gi\|170083299\|ref\|YP_001732619.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|188492144, gi... - gi\|188492144\|ref\|ZP_02999414.1\| inner membrane protein YigG [Escherichia coli 53638], gi\|188487343\|g... gi\|89110202, gi\|... - gi\|89110202\|ref\|AP_003982.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|124530445, gi... - gi\|124530445\|ref\|ZP_01701103.1\| inner membrane protein [Escherichia coli B], gi\|124499211\|gb\|EAY4670... EG11465 - PRK11371 family inner membrane protein / Required for swarming phenotype, function unknown; inner me... gi\|238862525, gi... - gi\|238902893\|ref\|YP_002928689.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886...	9.0E-43	[25..148]	[1..124]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPLVRGVAY CHANDVTQHM DVKLMLSVFI PSSERCVSRC RYLLSFALIN IIFSILVGVL  60
   61 LYLSFVILAI LFTILLHYLV INLNCQRFRD SGFEYIKFYV WGTLVIYIAS FVIMVAEDFA 120
  121 CDGFGMPLFL IWYFATFSLL LLAPPDSNSL NK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.930	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits