YRC Public Data Repository - Protein Structure Prediction

Protein:	SECE_SALTI
Organism:	Salmonella typhi
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SECE_SALTI.

Description	E-value	Query Range	Subject Range
gi\|50119177, gi\|... - gi\|50119177\|ref\|YP_048344.1\| preprotein translocase subunit SecE [Pectobacterium atrosepticum SCRI10...	4.0E-30	[1..127]	[1..127]
gi\|238713529, gi... - gi\|77957018\|ref\|ZP_00821087.1\| COG0690: Preprotein translocase subunit SecE [Yersinia bercovieri ATC... gi\|77960658 - gi\|77960658\|ref\|ZP_00824520.1\| COG0690: Preprotein translocase subunit SecE [Yersinia mollaretii ATC... gi\|238760250, gi... - gi\|238760250\|ref\|ZP_04621394.1\| Preprotein translocase subunit secE [Yersinia aldovae ATCC 35236], g... gi\|122087630, gi... - gi\|123440669\|ref\|YP_001004662.1\| preprotein translocase subunit SecE [Yersinia enterocolitica subsp.... gi\|77972255 - gi\|77972255\|ref\|ZP_00827827.1\| COG0690: Preprotein translocase subunit SecE [Yersinia frederiksenii ...	9.0E-30	[1..127]	[1..127]
gi\|77977798, gi\|... - gi\|77977798\|ref\|ZP_00833238.1\| COG0690: Preprotein translocase subunit SecE [Yersinia intermedia ATC...	1.0E-29	[1..127]	[1..127]
gi\|37524442, gi\|... - gi\|37524442\|ref\|NP_927786.1\| preprotein translocase subunit SecE [Photorhabdus luminescens subsp. la...	2.0E-29	[1..127]	[1..127]
gi\|108774027, gi... - gi\|229900554\|ref\|ZP_04515680.1\| preprotein translocase membrane subunit [Yersinia pestis Nepal516], ... gi\|161484891 - gi\|161484891\|ref\|NP_667816.2\| preprotein translocase subunit SecE [Yersinia pestis KIM] gi\|186893633, gi... - gi\|186893633\|ref\|YP_001870745.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis PB... gi\|229704187, gi... - gi\|229837499\|ref\|ZP_04457661.1\| preprotein translocase membrane subunit [Yersinia pestis Pestoides A... gi\|77635957, gi\|... - gi\|77635957\|ref\|ZP_00798036.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pestis Angola]... gi\|229695801, gi... - gi\|229839435\|ref\|ZP_04459594.1\| preprotein translocase membrane subunit [Yersinia pestis biovar Orie... gi\|77631228, gi\|... - gi\|77631228\|ref\|ZP_00793814.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pseudotubercul... Q66FQ8\|Q66FQ8_YERPS - Preprotein translocase SecE subunit - Yersinia pseudotuberculosis gi\|25301347 - pir\|\|AI0456 preprotein translocase SecE chain [imported] - Yersinia pestis (strain CO92) gi\|218930758, gi... - gi\|218930758\|ref\|YP_002348633.1\| preprotein translocase subunit SecE [Yersinia pestis CO92], gi\|1612... gi\|161511332 - gi\|161511332\|ref\|NP_994409.2\| preprotein translocase subunit SecE [Yersinia pestis biovar Microtus s... gi\|51587914, gi\|... - gi\|51594632\|ref\|YP_068823.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis IP 329... gi\|165919658, gi... - gi\|165928319\|ref\|ZP_02224151.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Orienta... gi\|165938231, gi... - gi\|89103178\|ref\|ZP_01175767.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pestis biovar ... gi\|166012041, gi... - gi\|166012041\|ref\|ZP_02232939.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|108781529, gi... - gi\|108809616\|ref\|YP_653532.1\| preprotein translocase subunit SecE [Yersinia pestis Antiqua], gi\|1087... gi\|166214395, gi... - gi\|166214395\|ref\|ZP_02240430.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|167048206, gi... - gi\|167402426\|ref\|ZP_02307886.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|153997213, gi... - gi\|153997213\|ref\|ZP_02022320.1\| preprotein translocase SecE subunit [Yersinia pestis CA88-4125], gi\|... gi\|166957159, gi... - gi\|167422948\|ref\|ZP_02314701.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Orienta... gi\|145212690, gi... - gi\|145600994\|ref\|YP_001165070.1\| preprotein translocase subunit SecE [Yersinia pestis Pestoides F], ... gi\|167054185, gi... - gi\|167426803\|ref\|ZP_02318556.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Mediaev... gi\|170022591, gi... - gi\|170022591\|ref\|YP_001719096.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis YP...	4.0E-29	[1..127]	[1..127]
gi\|21957174, gi\|... - gi\|22124393\|ref\|NP_667816.1\| translocase [Yersinia pestis KIM], gi\|21957174\|gb\|AAM84067.1\|AE013648_9... gi\|45437736, gi\|... - gi\|45442870\|ref\|NP_994409.1\| translocase [Yersinia pestis biovar Microtus str. 91001], gi\|45437736\|g...	7.0E-29	[1..127]	[6..132]
gi\|110617379, gi... - gi\|110807831\|ref\|YP_691351.1\| preprotein translocase subunit SecE [Shigella flexneri 5 str. 8401], g... gi\|30042996, gi\|... - gi\|30064736\|ref\|NP_838907.1\| preprotein translocase subunit SecE [Shigella flexneri 2a str. 2457T], ...	1.0E-27	[1..127]	[1..127]
gi\|81247734, gi\|... - gi\|82546323\|ref\|YP_410270.1\| preprotein translocase subunit SecE [Shigella boydii Sb227], gi\|8124773...	1.0E-27	[1..127]	[1..127]
SECE_ECOL6 - Protein translocase subunit SecE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=s... SECE_ECO57 - Protein translocase subunit SecE OS=Escherichia coli O157:H7 GN=secE PE=3 SV=1 EG10939 - preprotein translocase membrane subunit / SecYEG inner membrane translocon core subunit; preprotein ... gi\|170022016, gi... - gi\|170022016\|ref\|YP_001726970.1\| preprotein translocase subunit SecE [Escherichia coli ATCC 8739], g... gi\|170083441, gi... - gi\|170083441\|ref\|YP_001732761.1\| preprotein translocase membrane subunit [Escherichia coli str. K-12... gi\|170517465, gi... - gi\|170679747\|ref\|YP_001746365.1\| preprotein translocase subunit secE [Escherichia coli SMS-3-5], gi\|... gi\|170770137, gi... - gi\|170770137\|ref\|ZP_02904590.1\| preprotein translocase subunit secE [Escherichia albertii TW07627], ... gi\|187730737, gi... - gi\|187730737\|ref\|YP_001882666.1\| preprotein translocase subunit secE [Shigella boydii CDC 3083-94], ... gi\|188488119, gi... - gi\|188492920\|ref\|ZP_03000190.1\| preprotein translocase, SecE subunit [Escherichia coli 53638], gi\|18... gi\|192954739, gi... - gi\|193071947\|ref\|ZP_03052780.1\| preprotein translocase subunit secE [Escherichia coli E110019], gi\|1... gi\|194420816, gi... - gi\|194440250\|ref\|ZP_03072269.1\| preprotein translocase subunit secE [Escherichia coli 101-1], gi\|194... gi\|189359753, gi... - gi\|189359753\|gb\|EDU78172.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. EC448... gi\|168777408, gi... - gi\|187767368\|gb\|EDU31212.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. EC419... gi\|168780364, gi... - gi\|189001848\|gb\|EDU70834.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. EC407... gi\|189370178, gi... - gi\|189370178\|gb\|EDU88594.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. EC869... gi\|117626245, gi... - gi\|117626245\|ref\|YP_859568.1\| preprotein translocase subunit SecE [Escherichia coli APEC O1], gi\|115... gi\|124531367, gi... - gi\|124531367\|ref\|ZP_01701677.1\| preprotein translocase, SecE subunit [Escherichia coli B], gi\|124498... gi\|15804571, gi\|... - gi\|15804571\|ref\|NP_290612.1\| preprotein translocase subunit SecE [Escherichia coli O157:H7 EDL933], ... EG10939 - preprotein translocase membrane subunit / SecYEG inner membrane translocon core subunit; preprotein ... gi\|73857952, gi\|... - gi\|74314475\|ref\|YP_312894.1\| preprotein translocase subunit SecE [Shigella sonnei Ss046], gi\|7385795... gi\|85676089, gi\|... - gi\|89110058\|ref\|AP_003838.1\| preprotein translocase membrane subunit [Escherichia coli str. K-12 sub... gi\|157163449, gi... - gi\|75197845\|ref\|ZP_00707915.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli HS], g... gi\|75240373, gi\|... - gi\|75240373\|ref\|ZP_00724313.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli F11], ... gi\|218556535, gi... - gi\|218556535\|ref\|YP_002389449.1\| preprotein translocase subunit SecE [Escherichia coli IAI1], gi\|218... gi\|218561047, gi... - gi\|218561047\|ref\|YP_002393960.1\| preprotein translocase subunit SecE [Escherichia coli S88], gi\|2183... gi\|218692262, gi... - gi\|218692262\|ref\|YP_002400474.1\| preprotein translocase subunit SecE [Escherichia coli ED1a], gi\|218... SECE_ECOLI - Preprotein translocase subunit secE - Escherichia coli SECE_ECOL6 - Preprotein translocase subunit secE OS=Escherichia coli O6 GN=secE PE=3 SV=1 gi\|218697688, gi... - gi\|218697688\|ref\|YP_002405355.1\| preprotein translocase subunit SecE [Escherichia coli 55989], gi\|21... gi\|218372597, gi... - gi\|218702611\|ref\|YP_002410240.1\| preprotein translocase subunit SecE [Escherichia coli IAI39], gi\|21... gi\|157155377, gi... - gi\|75188711\|ref\|ZP_00701978.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli E24377... gi\|218707599, gi... - gi\|218707599\|ref\|YP_002415118.1\| preprotein translocase subunit SecE [Escherichia coli UMN026], gi\|2... gi\|195939606 - gi\|195939606\|ref\|ZP_03084988.1\| preprotein translocase subunit SecE [Escherichia coli O157:H7 str. E... gi\|208808098, gi... - gi\|208808098\|ref\|ZP_03250435.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. E... gi\|208734951, gi... - gi\|208813674\|ref\|ZP_03255003.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. E... gi\|208819192, gi... - gi\|208819192\|ref\|ZP_03259512.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. E... gi\|209396026, gi... - gi\|209396026\|ref\|YP_002273497.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. ... gi\|209914718, gi... - gi\|209921459\|ref\|YP_002295543.1\| preprotein translocase subunit SecE [Escherichia coli SE11], gi\|209... gi\|217322219, gi... - gi\|217325998\|ref\|ZP_03442082.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. T... gi\|218551035, gi... - gi\|218551035\|ref\|YP_002384826.1\| preprotein translocase subunit SecE [Escherichia fergusonii ATCC 35... gi\|91212814, gi\|... - gi\|91212814\|ref\|YP_542800.1\| preprotein translocase subunit SecE [Escherichia coli UTI89], gi\|910743... gi\|227837564, gi... - gi\|227885490\|ref\|ZP_04003295.1\| preprotein translocase subunit SecE [Escherichia coli 83972], gi\|227... gi\|226903061, gi... - gi\|237702748\|ref\|ZP_04533229.1\| preprotein translocase subunit SecE [Escherichia sp. 3_2_53FAA], gi\|... gi\|238903037, gi... - gi\|238903037\|ref\|YP_002928833.1\| preprotein translocase membrane subunit [Escherichia coli BW2952], ... gi\|242379511, gi... - gi\|251787238\|ref\|YP_003001542.1\| hypothetical protein B21_03810 [Escherichia coli BL21], gi\|24237951... gi\|253326434, gi... - gi\|254290672\|ref\|YP_003056420.1\| translocase [Escherichia coli BL21(DE3)], gi\|253979979\|gb\|ACT45649.... gi\|226838471, gi... - gi\|254039236\|ref\|ZP_04873285.1\| preprotein translocase membrane subunit [Escherichia sp. 1_1_43], gi... gi\|254163922, gi... - gi\|254163922\|ref\|YP_003047030.1\| translocase [Escherichia coli B str. REL606], gi\|253975823\|gb\|ACT41... gi\|254595379, gi... - gi\|254795979\|ref\|YP_003080816.1\| preprotein translocase membrane subunit [Escherichia coli O157:H7 s... gi\|15834158, gi\|... - gi\|15834158\|ref\|NP_312931.1\| preprotein translocase subunit SecE [Escherichia coli O157:H7 str. Saka... gi\|110345908, gi... - gi\|110644316\|ref\|YP_672046.1\| preprotein translocase subunit SecE [Escherichia coli 536], gi\|1103459...	2.0E-27	[1..127]	[1..127]
gi\|46914947, gi\|... - gi\|54310504\|ref\|YP_131524.1\| preprotein translocase subunit SecE [Photobacterium profundum SS9], gi\|...	2.0E-27	[1..125]	[1..125]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANTEAQGS GRGLEAMKWI VVAILLIVAI VGNYLYRDMM LPLRALAVVI LIAAAGGVAL  60
   61 LTTKGKATVA FAREARTEVR KVIWPTRQET LHTTLIVAAV TAVMSLILWG LDGILVRLVS 120
  121 FITGLRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2akhZ
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits