YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16505066, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16505066, gi|....

Description	E-value	Query Range	Subject Range
gi\|110616819, gi... - gi\|110807271\|ref\|YP_690791.1\| gluconate kinase 1 [Shigella flexneri 5 str. 8401], gi\|110616819\|gb\|AB... gi\|161485823 - gi\|161485823\|ref\|NP_709212.3\| gluconate kinase 1 [Shigella flexneri 2a str. 301] gi\|161486383 - gi\|161486383\|ref\|NP_839451.2\| gluconate kinase 1 [Shigella flexneri 2a str. 2457T]	4.0E-30	[1..173]	[1..173]
gi\|218353853, gi... - gi\|218697121\|ref\|YP_002404788.1\| gluconate kinase 1 [Escherichia coli 55989], gi\|218353853\|emb\|CAV00... gi\|218434129, gi... - gi\|218707032\|ref\|YP_002414551.1\| gluconate kinase 1 [Escherichia coli UMN026], gi\|218434129\|emb\|CAR1... EG12629 - gluconate kinase 2 / Gluconokinase, thermoresistant gi\|188493362, gi... - gi\|188493362\|ref\|ZP_03000632.1\| thermoresistant gluconokinase [Escherichia coli 53638], gi\|188488561... gi\|242378960, gi... - gi\|251786687\|ref\|YP_003000991.1\| hypothetical protein B21_03241 [Escherichia coli BL21], gi\|24237896... gi\|209920896, gi... - gi\|209920896\|ref\|YP_002294980.1\| gluconate kinase 1 [Escherichia coli SE11], gi\|209914155\|dbj\|BAG792... gi\|254163363, gi... - gi\|254163363\|ref\|YP_003046471.1\| gluconate kinase 2 [Escherichia coli B str. REL606], gi\|253975264\|g... gi\|218358243, gi... - gi\|218550702\|ref\|YP_002384493.1\| gluconate kinase 1 [Escherichia fergusonii ATCC 35469], gi\|21835824... gi\|85676606, gi\|... - gi\|89110575\|ref\|AP_004355.1\| gluconate kinase 2 [Escherichia coli str. K-12 substr. W3110], gi\|85676... gi\|218555987, gi... - gi\|218555987\|ref\|YP_002388900.1\| gluconate kinase 1 [Escherichia coli IAI1], gi\|218362755\|emb\|CAR003... gi\|238861308, gi... - gi\|238902528\|ref\|YP_002928324.1\| gluconate kinase 2 [Escherichia coli BW2952], gi\|238861308\|gb\|ACR63... gi\|161367505 - gi\|161367505\|ref\|NP_289985.2\| gluconate kinase 1 [Escherichia coli O157:H7 EDL933] gi\|161986425 - gi\|161986425\|ref\|YP_312461.2\| gluconate kinase 1 [Shigella sonnei Ss046] gi\|162139750 - gi\|162139750\|ref\|NP_312313.2\| gluconate kinase 1 [Escherichia coli O157:H7 str. Sakai] gi\|254290113, gi... - gi\|254290113\|ref\|YP_003055861.1\| gluconate kinase 2 [Escherichia coli BL21(DE3)], gi\|253979420\|gb\|AC... gi\|170082951, gi... - gi\|170082951\|ref\|YP_001732271.1\| gluconate kinase 2; gluconate transport, GNT I system [Escherichia ... gi\|254795356, gi... - gi\|254795356\|ref\|YP_003080193.1\| gluconate kinase 2, gluconate transport, GNT I system [Escherichia ... gi\|124528210, gi... - gi\|124528210\|ref\|ZP_01699543.1\| carbohydrate kinase, thermoresistant glucokinase family [Escherichia... GNTK_ECOLI - Thermoresistant gluconokinase (EC 2.7.1.12) (Gluconate kinase 2) - Escherichia coli EG12629 - gluconate kinase 2 / Gluconokinase, thermoresistant gi\|157068595, gi... - gi\|157162915\|ref\|YP_001460233.1\| gluconate kinase 1 [Escherichia coli HS], gi\|157068595\|gb\|ABV07850.... gi\|157159305, gi... - gi\|157159305\|ref\|YP_001464898.1\| gluconate kinase 1 [Escherichia coli E24377A], gi\|157081335\|gb\|ABV2...	5.0E-30	[1..173]	[1..173]
gi\|91074493, gi\|... - gi\|91212919\|ref\|YP_542905.1\| gluconate kinase 1 [Escherichia coli UTI89], gi\|91074493\|gb\|ABE09374.1\|... gi\|190908238, gi... - gi\|191171611\|ref\|ZP_03033159.1\| thermoresistant gluconokinase [Escherichia coli F11], gi\|190908238\|g...	6.0E-30	[1..173]	[8..180]
gi\|56962388, gi\|... - gi\|56962388\|ref\|YP_174114.1\| adenylylsulfate kinase [Bacillus clausii KSM-K16], gi\|56908626\|dbj\|BAD6...	1.0E-29	[4..177]	[24..200]
gi\|21465888, gi\|... - gi\|21465888\|pdb\|1KO4\|B Chain B, Crystal Structure Of Gluconate Kinase, gi\|21465887\|pdb\|1KO4\|A Chain ...	2.0E-29	[1..173]	[1..173]
gi\|238727699, gi... - gi\|77978671\|ref\|ZP_00834097.1\| COG3265: Gluconate kinase [Yersinia intermedia ATCC 29909], gi\|238792...	2.0E-29	[6..175]	[1..170]
gi\|77959572, gi\|... - gi\|77959572\|ref\|ZP_00823590.1\| COG3265: Gluconate kinase [Yersinia bercovieri ATCC 43970], gi\|238783...	2.0E-29	[6..174]	[1..169]
gi\|85118576 - gi\|85118576\|ref\|XP_965475.1\| hypothetical protein NCU02702 [Neurospora crassa OR74A] gi\|32422915, gi\|... - gi\|38567217\|emb\|CAE76509.1\| related to thermoresistant gluconokinase [Neurospora crassa], gi\|3242291...	3.0E-29	[4..171]	[52..225]
gi\|86749011, gi\|... - gi\|86749011\|ref\|YP_485507.1\| carbohydrate kinase, thermoresistant glucokinase [Rhodopseudomonas palu...	3.0E-29	[1..177]	[1..176]
gi\|58579955, gi\|... - gi\|58579955\|ref\|YP_198971.1\| gluconokinase [Xanthomonas oryzae pv. oryzae KACC10331], gi\|58424549\|gb...	4.0E-29	[2..171]	[9..177]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTNHDHHV YVLMGVSGSG KSAVASAVAH QLHAAFLDGD FLHPRCNIEK MASGEPLNDD  60
   61 DRKPWLQALN DAAFAMQRTN KISLIVCSAL KKHYRDLLRE GNPNLSFIYL KGDFDVIESR 120
  121 LKARKGHFFK TQMLVTQFET LQEPGADERD VLVVDIDQPL EGVVASTIEV INKGSTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1knqA
Description:	Gluconate kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009
nucleic acid binding	0.277920206084984	bayes_pls_golite062009
binding	0.100582610715958	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: