YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29144640, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29144640, gi|....

Description	E-value	Query Range	Subject Range
gi\|238912804 - gi\|238912804\|ref\|ZP_04656641.1\| outer membrane lipoprotein Blc [Salmonella enterica subsp. enterica ... gi\|62182788, gi\|... - gi\|62182788\|ref\|YP_219205.1\| outer membrane lipoprotein Blc [Salmonella enterica subsp. enterica ser...	8.0E-47	[1..177]	[1..177]
gi\|197213799, gi... - gi\|197250096\|ref\|YP_002149256.1\| outer membrane lipoprotein blc [Salmonella enterica subsp. enterica... gi\|197262554, gi... - gi\|197262554\|ref\|ZP_03162628.1\| outer membrane lipoprotein blc [Salmonella enterica subsp. enterica ... gi\|194444045, gi... - gi\|194444045\|ref\|YP_002043597.1\| outer membrane lipoprotein blc [Salmonella enterica subsp. enterica... gi\|194407963, gi... - gi\|194449659\|ref\|YP_002048385.1\| outer membrane lipoprotein Blc [Salmonella enterica subsp. enterica... gi\|205336308, gi... - gi\|205336308\|gb\|EDZ23072.1\| outer membrane lipoprotein blc [Salmonella enterica subsp. enterica sero... gi\|168263307, gi... - gi\|205348034\|gb\|EDZ34665.1\| outer membrane lipoprotein blc [Salmonella enterica subsp. enterica sero... gi\|161366974, gi... - gi\|161617610\|ref\|YP_001591575.1\| outer membrane lipoprotein Blc [Salmonella enterica subsp. enterica... gi\|16422901, gi\|... - gi\|16767588\|ref\|NP_463203.1\| outer membrane lipoprotein Blc [Salmonella typhimurium LT2], gi\|1642290...	5.0E-46	[1..177]	[1..177]
gi\|124531208, gi... - gi\|124531208\|ref\|ZP_01701553.1\| Lipocalin family protein [Escherichia coli B], gi\|124498727\|gb\|EAY46... gi\|13364607, gi\|... - gi\|15834384\|ref\|NP_313157.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. Sakai], g... gi\|188017489, gi... - gi\|188017489\|gb\|EDU55611.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4113], g... gi\|189357420, gi... - gi\|189357420\|gb\|EDU75839.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4401], g... EG12474 - outer membrane lipoprotein cell division and growth lipocalin / Outer membrane lipoprotein, cell div... gi\|168761019, gi... - gi\|189368556\|gb\|EDU86972.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4501], g... gi\|189363943, gi... - gi\|189363943\|gb\|EDU82362.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4486], g... gi\|168774528, gi... - gi\|187769878\|gb\|EDU33722.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4196], g... gi\|85676903, gi\|... - gi\|89110872\|ref\|AP_004652.1\| outer membrane lipoprotein [Escherichia coli str. K-12 substr. W3110], ... gi\|208733891, gi... - gi\|208812614\|ref\|ZP_03253943.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4045... gi\|193065739, gi... - gi\|75256206\|ref\|ZP_00727894.1\| COG3040: Bacterial lipocalin [Escherichia coli E22], gi\|193065739\|ref... gi\|208820831, gi... - gi\|208820831\|ref\|ZP_03261151.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4042... gi\|75238677, gi\|... - gi\|75238677\|ref\|ZP_00722666.1\| COG3040: Bacterial lipocalin [Escherichia coli E110019], gi\|193067783... gi\|209161195, gi... - gi\|209399795\|ref\|YP_002273696.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC411... gi\|75209850, gi\|... - gi\|75209850\|ref\|ZP_00710048.1\| COG3040: Bacterial lipocalin [Escherichia coli B171], gi\|194428972\|re... gi\|209921642, gi... - gi\|209921642\|ref\|YP_002295726.1\| outer membrane lipoprotein Blc [Escherichia coli SE11], gi\|20991490... gi\|157163617, gi... - gi\|75198000\|ref\|ZP_00708070.1\| COG3040: Bacterial lipocalin [Escherichia coli HS], gi\|157163617\|ref\|... gi\|217320431, gi... - gi\|217324210\|ref\|ZP_03440294.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. TW1458... gi\|218556706, gi... - gi\|218556706\|ref\|YP_002389620.1\| outer membrane lipoprotein Blc [Escherichia coli IAI1], gi\|21836347... gi\|218697901, gi... - gi\|218697901\|ref\|YP_002405568.1\| outer membrane lipoprotein Blc [Escherichia coli 55989], gi\|2183546... gi\|189001780, gi... - gi\|189001780\|gb\|EDU70766.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4076], g... gi\|189374719, gi... - gi\|189374719\|gb\|EDU93135.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC869], gi... gi\|254796173, gi... - gi\|254796173\|ref\|YP_003081010.1\| outer membrane lipoprotein (lipocalin) [Escherichia coli O157:H7 st... gi\|168802339, gi... - gi\|189375650\|gb\|EDU94066.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC508], gi... gi\|238861950, gi... - gi\|238903259\|ref\|YP_002929055.1\| outer membrane lipoprotein (lipocalin) [Escherichia coli BW2952], g... BLC_ECO57 - Outer membrane lipoprotein Blc OS=Escherichia coli O157:H7 GN=blc PE=3 SV=1 gi\|170021838, gi... - gi\|170021838\|ref\|YP_001726792.1\| outer membrane lipoprotein Blc [Escherichia coli ATCC 8739], gi\|169... EG12474 - outer membrane lipoprotein cell division and growth lipocalin / Outer membrane lipoprotein, cell div... gi\|169891434, gi... - gi\|170083599\|ref\|YP_001732919.1\| outer membrane lipoprotein (lipocalin) [Escherichia coli str. K-12 ... gi\|15804743, gi\|... - gi\|15804743\|ref\|NP_290784.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 EDL933], gi\|12... gi\|170683090, gi... - gi\|170683090\|ref\|YP_001746547.1\| outer membrane lipoprotein Blc [Escherichia coli SMS-3-5], gi\|17052... BLC_ECOLI - Outer membrane lipoprotein blc precursor - Escherichia coli gi\|195935943 - gi\|195935943\|ref\|ZP_03081325.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4024... gi\|208726729, gi... - gi\|208806928\|ref\|ZP_03249265.1\| outer membrane lipoprotein Blc [Escherichia coli O157:H7 str. EC4206...	2.0E-45	[1..177]	[1..177]
gi\|253980140, gi... - gi\|254290833\|ref\|YP_003056581.1\| outer membrane lipoprotein (lipocalin) [Escherichia coli BL21(DE3)]... gi\|242379677, gi... - gi\|251787404\|ref\|YP_003001708.1\| hypothetical protein B21_03983 [Escherichia coli BL21], gi\|24237967... gi\|253975984, gi... - gi\|254164083\|ref\|YP_003047191.1\| outer membrane lipoprotein (lipocalin) [Escherichia coli B str. REL... gi\|83587272, gi\|... - gi\|83587272\|ref\|ZP_00925901.1\| COG3040: Bacterial lipocalin [Escherichia coli 101-1], gi\|194437281\|r...	2.0E-45	[1..177]	[1..177]
gi\|56130391, gi\|... - gi\|56416134\|ref\|YP_153209.1\| outer membrane lipoprotein Blc [Salmonella enterica subsp. enterica ser... gi\|197096537, gi... - gi\|197365060\|ref\|YP_002144697.1\| outer membrane lipoprotein Blc [Salmonella enterica subsp. enterica...	3.0E-45	[1..177]	[1..177]
gi\|24115508, gi\|... - gi\|24115508\|ref\|NP_710018.1\| outer membrane lipoprotein Blc [Shigella flexneri 2a str. 301], gi\|2405... gi\|30065526, gi\|... - gi\|30065526\|ref\|NP_839697.1\| outer membrane lipoprotein Blc [Shigella flexneri 2a str. 2457T], gi\|30... gi\|110617621, gi... - gi\|110808073\|ref\|YP_691593.1\| outer membrane lipoprotein Blc [Shigella flexneri 5 str. 8401], gi\|110...	7.0E-45	[1..177]	[1..177]
gi\|218551421, gi... - gi\|218551421\|ref\|YP_002385213.1\| outer membrane lipoprotein Blc [Escherichia fergusonii ATCC 35469],... gi\|218368080, gi... - gi\|218561311\|ref\|YP_002394224.1\| outer membrane lipoprotein Blc [Escherichia coli S88], gi\|218368080... gi\|218430052, gi... - gi\|218692488\|ref\|YP_002400700.1\| outer membrane lipoprotein Blc [Escherichia coli ED1a], gi\|21843005... gi\|117626498, gi... - gi\|117626498\|ref\|YP_859821.1\| outer membrane lipoprotein Blc [Escherichia coli APEC O1], gi\|11551562... gi\|218702851, gi... - gi\|218702851\|ref\|YP_002410480.1\| outer membrane lipoprotein Blc [Escherichia coli IAI39], gi\|2183728... gi\|218707765, gi... - gi\|218707765\|ref\|YP_002415284.1\| outer membrane lipoprotein Blc [Escherichia coli UMN026], gi\|218434... gi\|91075275, gi\|... - gi\|91213701\|ref\|YP_543687.1\| outer membrane lipoprotein Blc [Escherichia coli UTI89], gi\|91075275\|gb... gi\|215267570, gi... - gi\|215489498\|ref\|YP_002331929.1\| outer membrane lipoprotein Blc [Escherichia coli O127:H6 str. E2348... gi\|188494652, gi... - gi\|75514910\|ref\|ZP_00737139.1\| COG3040: Bacterial lipocalin [Escherichia coli 53638], gi\|188494652\|r... gi\|74314639, gi\|... - gi\|74314639\|ref\|YP_313058.1\| outer membrane lipoprotein Blc [Shigella sonnei Ss046], gi\|73858116\|gb\|... gi\|157077828, gi... - gi\|75188865\|ref\|ZP_00702132.1\| COG3040: Bacterial lipocalin [Escherichia coli E24377A], gi\|157155798... gi\|26251045, gi\|... - gi\|26251045\|ref\|NP_757085.1\| outer membrane lipoprotein Blc [Escherichia coli CFT073], gi\|26111477\|g... gi\|75231254, gi\|... - gi\|75231254\|ref\|ZP_00717661.1\| COG3040: Bacterial lipocalin [Escherichia coli B7A], gi\|191165631\|ref... gi\|226840271, gi... - gi\|254037165\|ref\|ZP_04871242.1\| outer membrane lipoprotein Blc [Escherichia sp. 1_1_43], gi\|22684027... gi\|237703818, gi... - gi\|237703818\|ref\|ZP_04534299.1\| outer membrane lipoprotein blc [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227886805, gi... - gi\|227886805\|ref\|ZP_04004610.1\| lipocalin [Escherichia coli 83972], gi\|227836147\|gb\|EEJ46613.1\| lipo...	1.0E-44	[1..177]	[1..177]
gi\|110346102, gi... - gi\|110644510\|ref\|YP_672240.1\| outer membrane lipoprotein Blc [Escherichia coli 536], gi\|110346102\|gb... gi\|75239118, gi\|... - gi\|75239118\|ref\|ZP_00723098.1\| COG3040: Bacterial lipocalin [Escherichia coli F11], gi\|191173404\|ref...	1.0E-44	[1..177]	[1..177]
gi\|116256193, gi... - gi\|116256193\|ref\|YP_794146.1\| outer membrane lipoprotein Blc [Escherichia coli], gi\|115607412\|gb\|ABJ...	2.0E-44	[1..177]	[1..177]
gi\|82779422, gi\|... - gi\|82779422\|ref\|YP_405771.1\| outer membrane lipoprotein Blc [Shigella dysenteriae Sd197], gi\|8124357...	3.0E-44	[1..177]	[1..177]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLPVVAAV TAAFLVVACS SPTPPKGVTV VNNFDAKRYL GTWYEIARLD HRFERGLEQV  60
   61 TATYSLRDDG GINVINKGYN PAREMWQKTE GKAYFTGSPN RAALKVSFFG PFYGGYNVIA 120
  121 LDREYRHALV CGPNRDYLWI LSRTPTLSEE IKQQMLAVAT REGFDVNKLI WVKQSGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.30103
Match:	2acoA
Description:	No description for 2acoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits