YRC Public Data Repository - Protein Structure Prediction

Protein:	YTFE_SALTI
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YTFE_SALTI.

Description	E-value	Query Range	Subject Range
gi\|238910556 - gi\|238910556\|ref\|ZP_04654393.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... YTFE_SALG2 - Iron-sulfur cluster repair protein YtfE OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ytf... gi\|204926968, gi... - gi\|204926968\|ref\|ZP_03218170.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALPC - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi C (strain RKS4594) GN=ytfE PE=3 SV=1 YTFE_SALEP - Iron-sulfur cluster repair protein YtfE OS=Salmonella enteritidis PT4 (strain P125109) GN=ytfE PE=3 ... YTFE_SALPA - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ytf... YTFE_SALA4 - Iron-sulfur cluster repair protein YtfE OS=Salmonella agona (strain SL483) GN=ytfE PE=3 SV=1 gi\|194458414, gi... - gi\|194472050\|ref\|ZP_03078034.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALDC - Iron-sulfur cluster repair protein YtfE OS=Salmonella dublin (strain CT_02021853) GN=ytfE PE=3 SV=1 YTFE_SALPK - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A (strain AKU_12601) GN=ytfE PE=3 SV... gi\|205342276, gi... - gi\|205342276\|gb\|EDZ29040.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... YTFE_SALPB - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=y... gi\|195632942, gi... - gi\|195632942\|gb\|EDX51396.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... YTFE_SALHS - Iron-sulfur cluster repair protein YtfE OS=Salmonella heidelberg (strain SL476) GN=ytfE PE=3 SV=1 YTFE_SALNS - Iron-sulfur cluster repair protein YtfE OS=Salmonella newport (strain SL254) GN=ytfE PE=3 SV=1 gi\|168232747, gi... - gi\|205332972\|gb\|EDZ19736.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|205323879, gi... - gi\|205323879\|gb\|EDZ11718.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|205348673, gi... - gi\|205348673\|gb\|EDZ35304.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|168244106, gi... - gi\|205337067\|gb\|EDZ23831.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... RCMNS_SALPB - Regulator of cell morphogenesis and NO signaling OS=Salmonella paratyphi B (strain ATCC BAA-1250 / S... YTFE_SALPA, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A GN=ytfE PE=3 SV=1, Regulator of ce...	266.0	[0..1]	[220..1]
gi\|197242345, gi... - gi\|197264090\|ref\|ZP_03164164.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALTY, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella typhimurium GN=ytfE PE=3 SV=1, Regulator of ce... lcl\|NC_016856.1_... - [gene=ytfE] [protein=cell morphogenesis/cell wall metabolism regulator] [protein_id=YP_005240714.1] ... RCMNS_SALTY - Regulator of cell morphogenesis and NO signaling OS=Salmonella typhimurium GN=ytfE PE=3 SV=1 YTFE_SALTY - Iron-sulfur cluster repair protein YtfE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|167991172, gi... - gi\|205330323\|gb\|EDZ17087.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su...	266.0	[0..1]	[220..1]
YTFE_SALCH - Iron-sulfur cluster repair protein YtfE OS=Salmonella choleraesuis (strain SC-B67) GN=ytfE PE=3 SV=1 YTFE_SALCH, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella choleraesuis GN=ytfE PE=3 SV=1, Regulator of c... RCMNS_SALCH - Regulator of cell morphogenesis and NO signaling OS=Salmonella choleraesuis GN=ytfE PE=3 SV=1	266.0	[0..1]	[220..1]
YTFE_ECOL6 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... YTFE_ECO27 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ytfE... YTFE_ECOUT - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain UTI89 / UPEC) GN=ytfE PE=3 SV=1 YTFE_ESCF3 - Iron-sulfur cluster repair protein YtfE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / C... YTFE_ECO7I - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ytfE PE=... gi\|227886738, gi... - gi\|227886738\|ref\|ZP_04004543.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia coli ... YTFE_ECOK1 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O1:K1 / APEC GN=ytfE PE=3 SV=1 gi\|237703886, gi... - gi\|237703886\|ref\|ZP_04534367.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia sp. 3... YTFE_ECOSM - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ytfE PE=3 SV... sp\|B7UQM4\|YTFE_ECO27 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ytfE... gi\|170766934, gi... - gi\|170766934\|ref\|ZP_02901387.1\| regulator of cell morphogenesis and NO signaling [Escherichia albert... YTFE_ECOL6, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6 GN=ytfE PE=3 SV=1, Regulator of cell ...	262.0	[0..1]	[220..1]
EG12505 - iron-sulfur cluster repair protein RIC / Iron-sulfur cluster repair protein; RIC; confers resistance... gi\|83586756, gi\|... - gi\|83586756\|ref\|ZP_00925388.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Escherichi... YTFE_SHIB3 - Iron-sulfur cluster repair protein YtfE OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ... YTFE_SHIFL - Iron-sulfur cluster repair protein YtfE OS=Shigella flexneri GN=ytfE PE=3 SV=1 gi\|24054800, gi\|... - gi\|24115478\|ref\|NP_709988.1\| cell morphogenesis/cell wall metabolism regulator [Shigella flexneri 2a... gi\|30065498, gi\|... - gi\|30065498\|ref\|NP_839669.1\| cell morphogenesis/cell wall metabolism regulator [Shigella flexneri 2a... EG12505 - iron-sulfur cluster repair protein RIC / Iron-sulfur cluster repair protein; RIC; confers resistance... YTFE_ECOLC - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) G... gi\|124528276, gi... - gi\|124528276\|ref\|ZP_01699600.1\| protein of unknown function DUF542, ScdA domain protein [Escherichia... YTFE_SHIF8 - Iron-sulfur cluster repair protein YtfE OS=Shigella flexneri serotype 5b (strain 8401) GN=ytfE PE=3 ... YTFE_ECOBW - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ytfE P... gi\|251787463, gi... - gi\|251787463\|ref\|YP_003001767.1\| hypothetical protein B21_04044 [Escherichia coli BL21], gi\|24237973... gi\|253775161, gi... - gi\|254290893\|ref\|YP_003056641.1\| predicted regulator of cell morphogenesis and cell wall metabolism ... gi\|254037229, gi... - gi\|254037229\|ref\|ZP_04871306.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia sp. 1... gi\|254164143, gi... - gi\|254164143\|ref\|YP_003047251.1\| predicted regulator of cell morphogenesis and cell wall metabolism ... RCMNS_ECOLI, YTF... - (P39313) Hypothetical protein ytfE, Regulator of cell morphogenesis and NO signaling (RCMNS) - Esche... YTFE_ECOSE - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain SE11) GN=ytfE PE=3 SV=1 YTFE_ECODH - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain K12 / DH10B) GN=ytfE PE=3 SV=1 YTFE_ECO55 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain 55989 / EAEC) GN=ytfE PE=3 SV=1 YTFE_ECO45 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ytfE PE=3... YTFE_SHIDS - Iron-sulfur cluster repair protein YtfE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ytfE PE... gi\|85676960, gi\|... - gi\|89110929\|ref\|AP_004709.1\| predicted regulator of cell morphogenesis and cell wall metabolism [Esc... gi\|194415328, gi... - gi\|75212233\|ref\|ZP_00712273.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Escherichi... gi\|75229586, gi\|... - gi\|75229586\|ref\|ZP_00716125.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Escherichi... YTFE_ECO24 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ytfE... YTFE_ECOHS - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O9:H4 (strain HS) GN=ytfE PE=3 SV=1 gi\|75515452, gi\|... - gi\|75515452\|ref\|ZP_00737609.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Escherichi... YTFE_SHISS - Iron-sulfur cluster repair protein YtfE OS=Shigella sonnei (strain Ss046) GN=ytfE PE=3 SV=1 gi\|75235478, gi\|... - gi\|75235478\|ref\|ZP_00719686.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Escherichi... gi\|75258314, gi\|... - gi\|75258314\|ref\|ZP_00729745.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Escherichi...	261.0	[0..1]	[220..1]
YTFE_SHIBS - Iron-sulfur cluster repair protein YtfE OS=Shigella boydii serotype 4 (strain Sb227) GN=ytfE PE=3 SV...	261.0	[0..1]	[220..1]
YTFE_ECOL5 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ytfE P... YTFE_ECOLU - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=y... gi\|75242397, gi\|... - gi\|75242397\|ref\|ZP_00726159.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Escherichi...	260.0	[0..1]	[220..1]
gi\|72122218, gi\|... - gi\|73538881\|ref\|YP_299248.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia eutropha J...	259.0	[0..1]	[216..1]
gi\|15804800, gi\|... - gi\|15804800\|ref\|NP_290841.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia coli O15... YTFE_ECO57 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O157:H7 GN=ytfE PE=3 SV=1 gi\|15834441, gi\|... - gi\|15834441\|ref\|NP_313214.1\| iron-sulfur cluster repair di-iron protein [Escherichia coli O157:H7 st... gi\|217321798, gi... - gi\|217325577\|ref\|ZP_03441661.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O... gi\|254796230, gi... - gi\|254796230\|ref\|YP_003081067.1\| iron metabolism protein [Escherichia coli O157:H7 str. TW14359], gi... gi\|195936000 - gi\|195936000\|ref\|ZP_03081382.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia coli ... gi\|168797782, gi... - gi\|189379562\|gb\|EDU97978.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O157:... gi\|189374987, gi... - gi\|189374987\|gb\|EDU93403.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O157:... gi\|187770201, gi... - gi\|187770201\|gb\|EDU34045.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O157:... YTFE_ECO5E - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ytfE P... gi\|208818707, gi... - gi\|208818707\|ref\|ZP_03259027.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O... gi\|208813061, gi... - gi\|208813061\|ref\|ZP_03254390.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O... gi\|208726586, gi... - gi\|208806785\|ref\|ZP_03249122.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O... gi\|168766492, gi... - gi\|189364273\|gb\|EDU82692.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O157:... gi\|168760455, gi... - gi\|189368944\|gb\|EDU87360.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O157:... gi\|209749928, gi... - pir\|\|C86118 hypothetical protein ytfE [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168754783, gi... - gi\|189357766\|gb\|EDU76185.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O157:... gi\|168751102, gi... - gi\|188014823\|gb\|EDU52945.1\| regulator of cell morphogenesis and NO signaling [Escherichia coli O157:...	259.0	[0..1]	[220..1]
gi\|17549179 - gi\|17549179\|ref\|NP_522519.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia solanacear... gi\|17431431 - gi\|17431431\|emb\|CAD18109.1\| probable hypothetical protein [Ralstonia solanacearum GMI1000]	258.0	[0..1]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYRDQPLGE LALSIPRASA LFRQYDMDYC CGGKQTLARA AARHDVDIDI IEAQLAQLAE  60
   61 QPI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.69897
Match:	PF04405.5
Description:	No description for PF04405.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKDWRAVPLA DIIDHIVVRY HDRHREQLPE LILQATKVER VHADKPNVPR GLTKYLTALH  60
   61 EELSSHMMKE EQILFPMIKQ GMGRQATGPI SVMESEHDEA GELVDVIKHV TQNVTPPPEA 120
  121 CTTWKAMYNG INEMIDALME HISLENNVLF PRALAGE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.47
Match:	2p0nA
Description:	No description for 2p0nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits