YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29144790, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29144790, gi|....

Description	E-value	Query Range	Subject Range
gi\|197365212, gi... - gi\|197365212\|ref\|YP_002144849.1\| hypothetical protein SSPA4015 [Salmonella enterica subsp. enterica ... gi\|56130545, gi\|... - gi\|56416288\|ref\|YP_153363.1\| hypothetical protein SPA4324 [Salmonella enterica subsp. enterica serov...	7.0E-39	[1..153]	[1..153]
gi\|16767749, gi\|... - gi\|16767749\|ref\|NP_463364.1\| hypothetical protein STM4505 [Salmonella typhimurium LT2], gi\|16423071\|... lcl\|NC_016856.1_... - [gene=STM14_5408] [protein=hypothetical protein] [protein_id=YP_005240835.1] [location=4772403..4772...	1.0E-38	[1..153]	[1..153]
gi\|62130563, gi\|... - gi\|62182930\|ref\|YP_219347.1\| hypothetical protein SC4360 [Salmonella enterica subsp. enterica serova...	2.0E-38	[1..153]	[1..153]
gi\|11280553 - pir\|\|H81946 probable periplasmic protein NMA0993 [imported] - Neisseria meningitidis (strain Z2491 s... gi\|15793950, gi\|... - gi\|7379696\|emb\|CAB84263.1\| putative periplasmic protein [Neisseria meningitidis Z2491], gi\|218767902...	3.0E-33	[2..152]	[1..157]
gi\|254668203, gi... - gi\|254804661\|ref\|YP_003082882.1\| hypothetical protein NMO_0671 [Neisseria meningitidis], gi\|25466820... gi\|11280554 - pir\|\|D81158 conserved hypothetical protein NMB0783 [imported] - Neisseria meningitidis (strain MC58 ... gi\|7226015, gi\|1... - gi\|7226015\|gb\|AAF41196.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15676681\|...	5.0E-33	[2..152]	[1..157]
gi\|54298310, gi\|... - gi\|54298310\|ref\|YP_124679.1\| hypothetical protein lpp2368 [Legionella pneumophila str. Paris], gi\|53...	1.0E-31	[35..153]	[10..129]
gi\|36959033 - gi\|36959033\|gb\|AAQ87458.1\| Hypothetical protein (integral membrane protein) [Rhizobium sp. NGR234]	3.0E-31	[1..151]	[1..153]
gi\|52628356, gi\|... - gi\|52841245\|ref\|YP_095044.1\| hypothetical protein lpg1011 [Legionella pneumophila subsp. pneumophila... gi\|19881007 - gi\|19881007\|gb\|AAM00634.1\| unknown [Legionella pneumophila]	4.0E-31	[35..153]	[10..129]
gi\|113461801, gi... - gi\|113461801\|ref\|YP_719870.1\| hypothetical protein HS_1665 [Haemophilus somnus 129PT], gi\|112823844\|...	3.0E-28	[12..152]	[4..147]
gi\|33575814, gi\|... - gi\|33601378\|ref\|NP_888938.1\| hypothetical protein BB2398 [Bordetella bronchiseptica RB50], gi\|335758...	4.0E-28	[25..152]	[40..168]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTILKPFLS AVTLMLILIR PGFATEDGAI TMVKTYSAYD YLQTRARLMH AVADHGLVLF  60
   61 GEFDHARAAQ NVNLKMPPTT VLVFGNPKGG TPLMLAHPEL ALDLPFRVLI SQQADGRTLV 120
  121 SYHPAETLQR YGLDAADIQA LKKLEQLVEK SLH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1q9uA
Description:	Crystal structure of hypothetical protein APC35924 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits