YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25285904, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25285904, gi|....

Description	E-value	Query Range	Subject Range
gi\|200389241, gi... - gi\|200389241\|ref\|ZP_03215853.1\| pyruvate formate lyase-activating enzyme [Salmonella enterica subsp.... gi\|167989806, gi... - gi\|205331531\|gb\|EDZ18295.1\| pyruvate formate lyase-activating enzyme [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=yjjW] [protein=pyruvate formate lyase-activating enzyme] [protein_id=YP_005240908.1] [location... gi\|197263762, gi... - gi\|197263762\|ref\|ZP_03163836.1\| pyruvate formate lyase activating enzyme [Salmonella enterica subsp.... gi\|16767806, gi\|... - gi\|16767806\|ref\|NP_463421.1\| pyruvate formate lyase-activating enzyme [Salmonella typhimurium LT2], ...	1.0E-49	[1..287]	[1..287]
gi\|62130616, gi\|... - gi\|62182983\|ref\|YP_219400.1\| pyruvate formate lyase activating enzyme [Salmonella enterica subsp. en... gi\|56416339, gi\|... - gi\|56416339\|ref\|YP_153414.1\| hypothetical protein SPA4379 [Salmonella enterica subsp. enterica serov... gi\|197365261, gi... - gi\|197365261\|ref\|YP_002144898.1\| hypothetical protein SSPA4064 [Salmonella enterica subsp. enterica ... gi\|194401020, gi... - gi\|194442357\|ref\|YP_002043806.1\| pyruvate formate lyase activating enzyme [Salmonella enterica subsp...	1.0E-49	[1..287]	[1..287]
gi\|75239558, gi\|... - gi\|75239558\|ref\|ZP_00723528.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli F... gi\|110346408, gi... - gi\|110644816\|ref\|YP_672546.1\| hypothetical protein ECP_4763 [Escherichia coli 536], gi\|110346408\|gb\|... gi\|91214094, gi\|... - gi\|91214094\|ref\|YP_544080.1\| hypothetical protein UTI89_C5149 [Escherichia coli UTI89], gi\|91075668\|... gi\|115515861, gi... - gi\|117626737\|ref\|YP_860060.1\| hypothetical protein APECO1_2002 [Escherichia coli APEC O1], gi\|115515...	2.0E-48	[1..287]	[1..287]
gi\|209748918, gi... - pir\|\|D86137 probable activating enzyme yjjW [imported] - Escherichia coli (strain O157:H7, substrain... gi\|12519406, gi\|... - gi\|15804951\|ref\|NP_290993.1\| putative activating enzyme [Escherichia coli O157:H7 EDL933], gi\|125194... gi\|15834591, gi\|... - gi\|15834591\|ref\|NP_313364.1\| putative activating enzyme [Escherichia coli O157:H7], gi\|13364815\|dbj\|... gi\|168762730, gi... - gi\|189366965\|gb\|EDU85381.1\| radical SAM domain protein [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|168785022, gi... - gi\|189374932\|gb\|EDU93348.1\| radical SAM domain protein [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|15834591, gi\|... - gi\|15834591\|ref\|NP_313364.1\| putative activating enzyme [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|217321348, gi... - gi\|217325127\|ref\|ZP_03441211.1\| radical SAM domain protein [Escherichia coli O157:H7 str. TW14588], ...	4.0E-48	[1..287]	[1..287]
YJJW_ECOLI - Hypothetical protein yjjW - Escherichia coli gi\|238863062, gi... - gi\|238903466\|ref\|YP_002929262.1\| putative pyruvate formate lyase activating enzyme [Escherichia coli... EG12599 - putative pyruvate formate lyase activating enzyme / Predicted YjjI activase gi\|170083765, gi... - gi\|170083765\|ref\|YP_001733085.1\| pyruvate formate lyase activating enzyme [Escherichia coli str. K-1... gi\|253980365, gi... - gi\|254291056\|ref\|YP_003056806.1\| predicted pyruvate formate lyase activating enzyme [Escherichia col... gi\|251787628, gi... - gi\|251787628\|ref\|YP_003001932.1\| hypothetical protein B21_04221 [Escherichia coli BL21], gi\|24237990... EG12599 - putative pyruvate formate lyase activating enzyme / Predicted YjjI activase gi\|253976208, gi... - gi\|254164305\|ref\|YP_003047415.1\| predicted pyruvate formate lyase activating enzyme [Escherichia col... gi\|85677118, gi\|... - gi\|89111087\|ref\|AP_004867.1\| predicted pyruvate formate lyase activating enzyme [Escherichia coli st... gi\|218368379, gi... - gi\|218561610\|ref\|YP_002394523.1\| putative pyruvate formate lyase activating enzyme [Escherichia coli...	1.0E-47	[1..287]	[1..287]
gi\|192926734, gi... - gi\|75256291\|ref\|ZP_00727963.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli E... gi\|75209583, gi\|... - gi\|75209583\|ref\|ZP_00709801.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli B...	1.0E-47	[1..287]	[1..287]
gi\|24115609, gi\|... - gi\|24115609\|ref\|NP_710119.1\| putative activating enzyme [Shigella flexneri 2a str. 301], gi\|24054946... gi\|30043881, gi\|... - gi\|30065617\|ref\|NP_839788.1\| putative activating enzyme [Shigella flexneri 2a str. 2457T], gi\|300438... gi\|110808168, gi... - gi\|110808168\|ref\|YP_691688.1\| putative activating enzyme [Shigella flexneri 5 str. 8401], gi\|1106177...	1.0E-47	[1..287]	[1..287]
gi\|254037390, gi... - gi\|254037390\|ref\|ZP_04871467.1\| radical SAM domain-containing protein [Escherichia sp. 1_1_43], gi\|2... gi\|188491026, gi... - gi\|75515570\|ref\|ZP_00737727.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli 5... gi\|170021661, gi... - gi\|170021661\|ref\|YP_001726615.1\| radical SAM domain-containing protein [Escherichia coli ATCC 8739],... gi\|124499239, gi... - gi\|124530348\|ref\|ZP_01701034.1\| Radical SAM domain protein [Escherichia coli B], gi\|124499239\|gb\|EAY...	2.0E-47	[1..287]	[1..287]
gi\|83585287, gi\|... - gi\|83585287\|ref\|ZP_00923935.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli 1...	3.0E-47	[1..287]	[1..287]
gi\|193070595, gi... - gi\|75234542\|ref\|ZP_00718883.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Escherichia coli E...	4.0E-47	[1..287]	[1..287]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRCALVSK IIAFSCVDGP GSRLALFLQG CNLRCKNCHN PWTMGRCNDC GECVSQCPHH  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	1y4zB
Description:	The crystal structure of Nitrate Reductase A, NarGHI, in complex with the Q-site inhibitor pentachlorophenol
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [61-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALSIDGGKVV WRSDVCEQCD TCLKMCPQQA TPMAQTMSID DVLRHIRKAS LFIEGITVSG  60
   61 GEATTQLPFI VALFTALKAD PQLQRLTCLV DSNGQLSETG WQKLLPVCDG VMLDLKAWKS 120
  121 ECHHRLTGRD NTHIKHSIRF LAARGKLAEL RLLVIPGQVD YAAHIDSLAA FITSLGEVPV 180
  181 RLNAFHAHGV YGEAKAWPGA TPQEVERLAD GLRARGVAKL ILPALYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	1tv7A
Description:	Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.85375915825216	bayes_pls_golite062009
transferase activity	0.885866547766734	bayes_pls_golite062009
oxidoreductase activity	0.497602428796508	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	0.0354148694695802	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: