YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15800413, gi\|...
Organism:	Escherichia coli O157:H7 str. EDL933
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15800413, gi|....

Description	E-value	Query Range	Subject Range
gi\|50120289, gi\|... - gi\|50120289\|ref\|YP_049456.1\| putative hydrolase-oxidase [Pectobacterium atrosepticum SCRI1043], gi\|4...	325.0	[0..1]	[247..1]
gi\|253972681, gi... - gi\|254160780\|ref\|YP_003043888.1\| conserved metal-binding protein [Escherichia coli B str. REL606], g... gi\|253325364, gi... - gi\|254287568\|ref\|YP_003053316.1\| conserved metal-binding protein [Escherichia coli BL21(DE3)], gi\|25... gi\|194439245, gi... - gi\|83585358\|ref\|ZP_00924005.1\| COG0327: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|242376472, gi... - gi\|251784199\|ref\|YP_002998503.1\| hypothetical protein B21_00659 [Escherichia coli BL21], gi\|24237647...	316.0	[0..1]	[247..1]
gi\|110804660, gi... - gi\|110804660\|ref\|YP_688180.1\| putative hydrolase-oxidase [Shigella flexneri 5 str. 8401], gi\|1106142... gi\|30062125, gi\|... - gi\|30062125\|ref\|NP_836296.1\| putative hydrolase-oxidase [Shigella flexneri 2a str. 2457T], gi\|300403... gi\|24050829, gi\|... - gi\|24112012\|ref\|NP_706522.1\| putative hydrolase-oxidase [Shigella flexneri 2a str. 301], gi\|24050829...	316.0	[0..1]	[247..1]
gi\|191174059, gi... - gi\|75237368\|ref\|ZP_00721410.1\| COG0327: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|110342512, gi... - gi\|110640920\|ref\|YP_668648.1\| putative hydrolase-oxidase [Escherichia coli 536], gi\|110342512\|gb\|ABG...	316.0	[0..1]	[247..1]
gi\|157157712, gi... - gi\|75189731\|ref\|ZP_00702998.1\| COG0327: Uncharacterized conserved protein [Escherichia coli E24377A]...	316.0	[0..1]	[247..1]
gi\|74311235, gi\|... - gi\|74311235\|ref\|YP_309654.1\| putative hydrolase-oxidase [Shigella sonnei Ss046], gi\|73854712\|gb\|AAZ8...	315.0	[0..1]	[247..1]
gi\|81240124, gi\|... - gi\|82775976\|ref\|YP_402323.1\| putative hydrolase-oxidase [Shigella dysenteriae Sd197], gi\|81240124\|gb...	313.0	[0..1]	[247..1]
gi\|29142574, gi\|... - gi\|29142574\|ref\|NP_805916.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica serovar... gi\|16759653 - gi\|16759653\|ref\|NP_455270.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica serovar... YBGI_SALTY - UPF0135 protein ybgI OS=Salmonella typhimurium GN=ybgI PE=3 SV=1 gi\|205347163, gi... - gi\|205347163\|gb\|EDZ33794.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205339946, gi... - gi\|205339946\|gb\|EDZ26710.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168238853, gi... - gi\|197288347\|gb\|EDY27728.1\| NIF3 family protein [Salmonella enterica subsp. enterica serovar Schwarz... gi\|205334693, gi... - gi\|205334693\|gb\|EDZ21457.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194468567, gi... - gi\|194468567\|ref\|ZP_03074551.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194450640, gi... - gi\|194450640\|ref\|YP_002044743.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica ser... gi\|168820163, gi... - gi\|205343242\|gb\|EDZ30006.1\| NIF3 family protein [Salmonella enterica subsp. enterica serovar Weltevr... gi\|168467735, gi... - gi\|195629165\|gb\|EDX48533.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YBGI_SALTY - UPF0135 protein ybgI OS=Salmonella typhimurium GN=ybgI PE=3 SV=1 GCH1L_SALTI - GTP cyclohydrolase 1 type 2 homolog OS=Salmonella typhi GN=ybgI PE=3 SV=1 gi\|205328857, gi... - gi\|205328857\|gb\|EDZ15621.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YBGI_SALTI - UPF0135 protein ybgI OS=Salmonella typhi GN=ybgI PE=3 SV=1 GCH1L_SALTY - GTP cyclohydrolase 1 type 2 homolog OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... gi\|205322573, gi... - gi\|205322573\|gb\|EDZ10412.1\| NIF3 family protein [Salmonella enterica subsp. enterica serovar Saintpa... gi\|161615063, gi... - gi\|161615063\|ref\|YP_001589028.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica ser... gi\|213648430 - gi\|213648430\|ref\|ZP_03378483.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica sero... gi\|204930065, gi... - gi\|204930065\|ref\|ZP_03221086.1\| NIF3 family protein [Salmonella enterica subsp. enterica serovar Jav... gi\|198242999, gi... - gi\|198242999\|ref\|YP_002214693.1\| NIF3 family protein [Salmonella enterica subsp. enterica serovar Du... gi\|197094569, gi... - gi\|197363092\|ref\|YP_002142729.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica ser... gi\|194735431, gi... - gi\|194735431\|ref\|YP_002113818.1\| NIF3 family protein [Salmonella enterica subsp. enterica serovar Sc... gi\|213428162 - gi\|213428162\|ref\|ZP_03360912.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica sero... gi\|213163178 - gi\|213163178\|ref\|ZP_03348888.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica sero... gi\|207856168, gi... - gi\|207856168\|ref\|YP_002242819.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica ser... gi\|205271769, gi... - gi\|205351988\|ref\|YP_002225789.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica ser... gi\|238911655 - gi\|238911655\|ref\|ZP_04655492.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=ybgI] [protein=putative hydrolase-oxidase] [protein_id=YP_005236430.1] [location=778545..77928... gi\|62179300, gi\|... - gi\|62179300\|ref\|YP_215717.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica serovar... gi\|56414169, gi\|... - gi\|56414169\|ref\|YP_151244.1\| putative hydrolase-oxidase [Salmonella enterica subsp. enterica serovar...	313.0	[0..1]	[247..1]
gi\|42543087, gi\|... - gi\|42543087\|pdb\|1NMO\|F Chain F, Structural Genomics, Protein Ybgi, Unknown Function, gi\|42543086\|pdb...	310.0	[0..2]	[247..2]
gi\|77961526 - gi\|77961526\|ref\|ZP_00825361.1\| COG0327: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	304.0	[0..1]	[247..1]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTELEQLI NEKLNSAAIS DYAPNGLQVE GKETVQKIVT GVTASQALLD EAVRLGADAV  60
   61 IVHHGYFWKG ESPVIRGMKR NRLKTLLAND INLYGWHLPL DAHPELGNNA QLAALLGITV 120
  121 MGEIEPLVPW GELTMPVPGL ELASWIEARL GRKPLWCGDT GPEVVQRVAW CTGGGQSFID 180
  181 SAARFGVDAF ITGEVSEQTI HSAREQGLHF YAAGHHATER GGIRALSEWL NENTDLDVTF 240
  241 IDIPNPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.39794
Match:	1nmoA
Description:	Structural genomics, protein ybgI, unknown function
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits