YRC Public Data Repository - Protein Structure Prediction

Protein:	EG12657
Organism:	Escherichia coli K-12
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EG12657.

Description	E-value	Query Range	Subject Range
gi\|60593550 - gi\|60593550\|pdb\|1TUV\|A Chain A, Crystal Structure Of Ygin In Complex With Menadione	103.0	[0..1]	[104..1]
gi\|26249600, gi\|... - gi\|26249600\|ref\|NP_755640.1\| hypothetical protein c3769 [Escherichia coli CFT073], gi\|26110008\|gb\|AA... gi\|190907222, gi... - gi\|75240517\|ref\|ZP_00724445.1\| COG1359: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|226899259, gi... - gi\|237706219\|ref\|ZP_04536700.1\| ygiN [Escherichia sp. 3_2_53FAA], gi\|226899259\|gb\|EEH85518.1\| ygiN [... gi\|91212449, gi\|... - gi\|91212449\|ref\|YP_542435.1\| protein YgiN [Escherichia coli UTI89], gi\|91074023\|gb\|ABE08904.1\| prote... gi\|218366877, gi... - gi\|218560108\|ref\|YP_002393021.1\| quinol monooxygenase [Escherichia coli S88], gi\|218366877\|emb\|CAR04... gi\|227835137, gi... - gi\|227887741\|ref\|ZP_04005546.1\| quinol monooxygenase YgiN [Escherichia coli 83972], gi\|227835137\|gb\|... gi\|110344861, gi... - gi\|110643269\|ref\|YP_670999.1\| putative cytoplasmic protein [Escherichia coli 536], gi\|110344861\|gb\|A... gi\|218428891, gi... - gi\|218691327\|ref\|YP_002399539.1\| quinol monooxygenase [Escherichia coli ED1a], gi\|218428891\|emb\|CAR0...	102.0	[0..1]	[104..1]
gi\|82778362, gi\|... - gi\|82778362\|ref\|YP_404711.1\| hypothetical protein SDY_3211 [Shigella dysenteriae Sd197], gi\|81242510...	101.0	[0..1]	[104..1]
gi\|161365532, gi... - gi\|161616168\|ref\|YP_001590133.1\| hypothetical protein SPAB_03970 [Salmonella enterica subsp. enteric... gi\|167551908, gi... - gi\|205323283\|gb\|EDZ11122.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|167990270, gi... - gi\|205331156\|gb\|EDZ17920.1\| protein YgiN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|168231778, gi... - gi\|205333883\|gb\|EDZ20647.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|29139076, gi\|... - gi\|29143442\|ref\|NP_806784.1\| hypothetical protein t3101 [Salmonella enterica subsp. enterica serovar... gi\|16761955 - gi\|16761955\|ref\|NP_457572.1\| hypothetical protein STY3358 [Salmonella enterica subsp. enterica serov... gi\|16504257, gi\|... - gi\|25337219\|pir\|\|AD0889 conserved hypothetical protein STY3358 [imported] - Salmonella enterica subs... gi\|16421736, gi\|... - gi\|16766480\|ref\|NP_462095.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421736\|... gi\|198245544, gi... - gi\|198245544\|ref\|YP_002217159.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Dublin st... gi\|199605244, gi... - gi\|200388146\|ref\|ZP_03214758.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Virchow st... gi\|204322372, gi... - gi\|204928050\|ref\|ZP_03219250.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Javiana st... gi\|205354096, gi... - gi\|205354096\|ref\|YP_002227897.1\| hypothetical protein SG3077 [Salmonella enterica subsp. enterica se... gi\|62181694, gi\|... - gi\|62181694\|ref\|YP_218111.1\| hypothetical protein SC3124 [Salmonella enterica subsp. enterica serova... gi\|194711366, gi... - gi\|194735864\|ref\|YP_002116134.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|56129378, gi\|... - gi\|56415121\|ref\|YP_152196.1\| hypothetical protein SPA3049 [Salmonella enterica subsp. enterica serov... gi\|197249456, gi... - gi\|197249456\|ref\|YP_002148107.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Agona str... gi\|197243042, gi... - gi\|197264787\|ref\|ZP_03164861.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197095527, gi... - gi\|197364050\|ref\|YP_002143687.1\| hypothetical protein SSPA2845 [Salmonella enterica subsp. enterica ... gi\|168819758, gi... - gi\|205343284\|gb\|EDZ30048.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194442206, gi... - gi\|194442206\|ref\|YP_002042446.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Newport s... gi\|194451174, gi... - gi\|194451174\|ref\|YP_002047176.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194471945, gi... - gi\|194471945\|ref\|ZP_03077929.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|197288992, gi... - gi\|197288992\|gb\|EDY28363.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|205337815, gi... - gi\|205337815\|gb\|EDZ24579.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|205348477, gi... - gi\|205348477\|gb\|EDZ35108.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168463612, gi... - gi\|195633245\|gb\|EDX51659.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|213973587 - gi\|213973587\|ref\|ZP_03400846.1\| hypothetical protein Salmonellaentericaenterica_02566 [Salmonella en... gi\|214001845 - gi\|214001845\|ref\|ZP_03412580.1\| hypothetical protein Salmonellentericaenterica_15986 [Salmonella ent... gi\|224469508, gi... - gi\|224584980\|ref\|YP_002638779.1\| hypothetical protein SPC_3253 [Salmonella enterica subsp. enterica ... gi\|213424346 - gi\|213424346\|ref\|ZP_03357170.1\| hypothetical protein SentesTyphi_01030 [Salmonella enterica subsp. e... gi\|213614426 - gi\|213614426\|ref\|ZP_03371252.1\| hypothetical protein SentesTyp_13494 [Salmonella enterica subsp. ent... gi\|213645889 - gi\|213645889\|ref\|ZP_03375942.1\| hypothetical protein SentesTy_00169 [Salmonella enterica subsp. ente... gi\|213855232 - gi\|213855232\|ref\|ZP_03383472.1\| hypothetical protein SentesT_14632 [Salmonella enterica subsp. enter... gi\|207858439, gi... - gi\|207858439\|ref\|YP_002245090.1\| hypothetical protein SEN3023 [Salmonella enterica subsp. enterica s... gi\|213029280 - gi\|213029280\|ref\|ZP_03343727.1\| hypothetical protein Salmonelentericaenterica_46695 [Salmonella ente... gi\|213052526 - gi\|213052526\|ref\|ZP_03345404.1\| hypothetical protein Salmoneentericaenterica_06131 [Salmonella enter... gi\|213420355 - gi\|213420355\|ref\|ZP_03353421.1\| hypothetical protein Salmonentericaenterica_22425 [Salmonella enteri... gi\|238909981 - gi\|238909981\|ref\|ZP_04653818.1\| hypothetical protein SentesTe_02445 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ygiN] [protein=putative cytoplasmic protein] [protein_id=YP_005239352.1] [location=3361775..33...	98.0	[0..1]	[104..1]
gi\|55247162, gi\|... - gi\|57965636\|ref\|XP_561258.1\| ENSANGP00000026009 [Anopheles gambiae str. PEST], gi\|55247162\|gb\|EAL423...	93.0	[0..2]	[103..5]
gi\|86572017, gi\|... - gi\|86748989\|ref\|YP_485485.1\| antibiotic biosynthesis monooxygenase [Rhodopseudomonas palustris HaA2]...	91.0	[0..1]	[98..1]
gi\|77962284, gi\|... - gi\|77962284\|ref\|ZP_00826106.1\| COG1359: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	90.0	[0..1]	[103..1]
gi\|238727069, gi... - gi\|77978325\|ref\|ZP_00833756.1\| COG1359: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	89.0	[0..1]	[103..1]
gi\|7470153 - pir\|\|S77088 hypothetical protein sll1783 - Synechocystis sp. (strain PCC 6803) Y1783_SYNY3 - Uncharacterized protein sll1783 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1783 PE=3 SV=1 YH83_SYNY3, Y178... - (P73602) Hypothetical protein sll1783, Uncharacterized protein sll1783 OS=Synechocystis sp. (strain ...	88.0	[0..2]	[103..50]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTVIAEIRT RPGQHHRQAV LDQFAKIVPT VLKEEGCHGY APMVDCAAGV SFQSMAPDSI  60
   61 VMIEQWESIA HLEAHLQTPH MKAYSEAVKG DVLEMNIRIL QPGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1tuvA
Description:	Crystal structure of YgiN in complex with menadione
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits