YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15828284
Organism:	Mycobacterium leprae TN
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15828284.

Description	E-value	Query Range	Subject Range
gi\|23492890, gi\|... - gi\|25027608\|ref\|NP_737662.1\| hypothetical protein CE1052 [Corynebacterium efficiens YS-314], gi\|2349...	309.0	[0..1]	[286..1]
gi\|21323755, gi\|... - gi\|23308816\|ref\|NP_600215.2\| hypothetical protein NCgl0948 [Corynebacterium glutamicum ATCC 13032], ...	307.0	[0..1]	[286..1]
gi\|111022815, gi... - gi\|111022815\|ref\|YP_705787.1\| N-acetylglucosaminylphosphatidylinositol deacetylase [Rhodococcus jost...	304.0	[0..1]	[290..1]
gi\|108771525, gi... - gi\|108801106\|ref\|YP_641303.1\| LmbE-like protein [Mycobacterium sp. MCS], gi\|108771525\|gb\|ABG10247.1\|... gi\|92438088, gi\|... - gi\|92917690\|ref\|ZP_01286300.1\| LmbE-like protein [Mycobacterium sp. KMS], gi\|92438088\|gb\|EAS95945.1\|... gi\|92430790, gi\|... - gi\|92911786\|ref\|ZP_01280424.1\| LmbE-like protein [Mycobacterium sp. JLS], gi\|92430790\|gb\|EAS90130.1\|...	303.0	[0..1]	[289..1]
gi\|255095852 - gi\|255095852\|ref\|ZP_05325330.1\| mycothiol conjugate amidase [Mycobacterium tuberculosis KZN 605] gi\|254814875 - gi\|254814875\|ref\|ZP_05219876.1\| mycothiol conjugate amidase [Mycobacterium tuberculosis KZN 4207] gi\|254550074 - gi\|254550074\|ref\|ZP_05140521.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis '98-R604... gi\|253321385, gi... - gi\|253799882\|ref\|YP_003032883.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis KZN 143... gi\|134149507, gi... - gi\|254363993\|ref\|ZP_04980039.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis str. Haa... gi\|148505019, gi... - gi\|167967357\|ref\|ZP_02549634.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis H37Ra], ... gi\|31617861, gi\|... - gi\|31792273\|ref\|NP_854766.1\| Mycothiol conjugate amidase Mca (Mycothiol S-conjugate amidase) [Mycoba... MCA_MYCTU - Mycothiol S-conjugate amidase OS=Mycobacterium tuberculosis GN=mca PE=1 SV=1 gi\|123214634, gi... - gi\|76785142\|ref\|ZP_00772315.1\| COG2120: Uncharacterized proteins, LmbE homologs [Mycobacterium tuber... gi\|81254994, gi\|... - gi\|81254994\|ref\|ZP_00879488.1\| COG2120: Uncharacterized proteins, LmbE homologs [Mycobacterium tuber... gi\|215402905 - gi\|215402905\|ref\|ZP_03415086.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis 02_1987] gi\|215410695 - gi\|215410695\|ref\|ZP_03419503.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis 94_M4241... gi\|215426371 - gi\|215426371\|ref\|ZP_03424290.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis T92] gi\|215429948 - gi\|215429948\|ref\|ZP_03427867.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis EAS054] MCA_MYCTO - Mycothiol S-conjugate amidase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=mca PE=3 ... gi\|121637011, gi... - gi\|121637011\|ref\|YP_977234.1\| Mycothiol conjugate amidase Mca [Mycobacterium bovis BCG str. Pasteur ... gi\|215445237 - gi\|215445237\|ref\|ZP_03431989.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis T85] MCA_MYCTU - Mycothiol S-conjugate amidase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mca PE=1 ... gi\|218752762 - gi\|218752762\|ref\|ZP_03531558.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis GM 1503] gi\|219556959 - gi\|219556959\|ref\|ZP_03536035.1\| mycothiol conjugate amidase mca [Mycobacterium tuberculosis T17] gi\|224772597, gi... - gi\|224989484\|ref\|YP_002644171.1\| mycothiol conjugate amidase [Mycobacterium bovis BCG str. Tokyo 172...	303.0	[0..1]	[287..1]
gi\|38199783 - gi\|38199783\|emb\|CAE49446.1\| Conserved hypothetical protein [Corynebacterium diphtheriae] gi\|38233523 - gi\|38233523\|ref\|NP_939290.1\| hypothetical protein DIP0927 [Corynebacterium diphtheriae NCTC 13129]	299.0	[0..2]	[288..6]
gi\|145215124, gi... - gi\|89341321\|ref\|ZP_01193565.1\| LmbE-like protein [Mycobacterium flavescens PYR-GCK], gi\|89318481\|gb\|...	297.0	[0..1]	[290..1]
gi\|29606950, gi\|... - gi\|29829841\|ref\|NP_824475.1\| hypothetical protein SAV_3299 [Streptomyces avermitilis MA-4680], gi\|29...	295.0	[0..3]	[286..4]
MCA_STRCO - Mycothiol S-conjugate amidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=mca...	293.0	[0..3]	[286..4]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELRLMAVH AHPDDESSKG AATLARYADE GHRVLVVTLT GGERGEILNP AMDLPDVHGH  60
   61 IAEIRRDEMA KAAEILGVEH TWLGFIDSGL PKGDPPPPLP DDCFALVPLE VCTEALVRVV 120
  121 RKFRPHVLTT YDENGGYPHP DHIRCHQVSV DAYEAACDYR RFPDAGKPWT VSKLYYNHGF 180
  181 LRARMQLLHD EFAKHGQAGP FDKWLAQSNP AHDPFESRVT TRVECSAYFS QRDDALRAHA 240
  241 TQIDPKAEFF AAPISWQQRL WPTEEFELAR SRVPTRLPEH DLFAGIEAAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	1q7tA
Description:	Rv1170 (MshB) from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits