YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25302149
Organism:	Yersinia pestis
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25302149.

Description	E-value	Query Range	Subject Range
gi\|91227671, gi\|... - gi\|91227671\|ref\|ZP_01261948.1\| hypothetical protein V12G01_13339 [Vibrio alginolyticus 12G01], gi\|91...	0.0	[1..310]	[1..310]
gi\|75853599, gi\|... - gi\|75853599\|ref\|ZP_00761405.1\| COG0196: FAD synthase [Vibrio sp. Ex25], gi\|254230239\|ref\|ZP_04923630...	0.0	[1..310]	[1..310]
gi\|77961934 - gi\|77961934\|ref\|ZP_00825762.1\| COG0196: FAD synthase [Yersinia mollaretii ATCC 43969]	0.0	[1..312]	[1..312]
gi\|75826041, gi\|... - gi\|75826041\|ref\|ZP_00755476.1\| COG0196: FAD synthase [Vibrio cholerae O395], gi\|227117056\|ref\|YP_002...	0.0	[1..311]	[1..311]
gi\|148875139, gi... - gi\|153829356\|ref\|ZP_01982023.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae 623-39], ... gi\|153826783, gi... - gi\|153826783\|ref\|ZP_01979450.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae MZO-2], g... gi\|75814478, gi\|... - gi\|75814478\|ref\|ZP_00745061.1\| COG0196: FAD synthase [Vibrio cholerae V52], gi\|121730023\|ref\|ZP_0168... gi\|124114898, gi... - gi\|153215107\|ref\|ZP_01949814.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae 1587], gi... gi\|254291959, gi... - gi\|254291959\|ref\|ZP_04962739.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae AM-19226]...	0.0	[1..311]	[1..311]
gi\|28805516, gi\|... - gi\|28897307\|ref\|NP_796912.1\| bifunctional riboflavin kinase/FMN adenylyltransferase [Vibrio parahaem... gi\|28805516 - gi\|28805516\|dbj\|BAC58796.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio parahaemolyticus RIMD ...	0.0	[1..310]	[1..310]
gi\|77959743 - gi\|77959743\|ref\|ZP_00823760.1\| COG0196: FAD synthase [Yersinia bercovieri ATCC 43970]	0.0	[1..312]	[1..312]
gi\|116215812, gi... - gi\|75822550\|ref\|ZP_00752154.1\| COG0196: FAD synthase [Vibrio cholerae RC385], gi\|116215812\|ref\|ZP_01...	0.0	[1..311]	[15..325]
gi\|77976922 - gi\|77976922\|ref\|ZP_00832387.1\| COG0196: FAD synthase [Yersinia intermedia ATCC 29909]	0.0	[1..312]	[1..312]
gi\|9655120, gi\|1... - gi\|9655120\|gb\|AAF93846.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae O1 biovar El To... gi\|11278400 - pir\|\|C82293 riboflavin kinase/FMN adenylyltransferase VC0681 [imported] - Vibrio cholerae (strain N1... gi\|121587778, gi... - gi\|121587778\|ref\|ZP_01677538.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae 2740-80],... gi\|125617527, gi... - gi\|75829535\|ref\|ZP_00758834.1\| COG0196: FAD synthase [Vibrio cholerae MO10], gi\|254851013\|ref\|ZP_052... gi\|126510740, gi... - gi\|153818718\|ref\|ZP_01971385.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae NCTC 8457... gi\|153823934, gi... - gi\|153823934\|ref\|ZP_01976601.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae B33], gi\|... gi\|227080862, gi... - gi\|227080862\|ref\|YP_002809413.1\| riboflavin kinase/FMN adenylyltransferase [Vibrio cholerae M66-2], ...	0.0	[1..311]	[1..311]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELIRGIHNI RARHHGCVLT IGNFDGVHRG HQALLEQLKR EGQRLGLPVM VMIFEPQPLE  60
   61 LFAADKAPAR LTRLRDKAKY LAQAGVDYLL CVKFDPRFAA NTAQAFVAQL LVEKLGVKFL 120
  121 TVGDDFRFGA GRQGDFQLLQ QAGAEFGFDV ISTDSFCDGG LRISSTAIRQ ALHDDDLVLA 180
  181 ETLLGHPYSI SGRVVHGDEL GRTIGFPTAN LPLKRLVAPV KGVYAVDVYG LGSTPLYGVA 240
  241 NIGTRPTVAG VRQQLEVHLL DVTMDLYGCH IDVVLRAKLR NEQRFASLEA LKQQIANDVV 300
  301 TARTFFGLKT PV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1mrzA
Description:	Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits