YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218928272, gi...
Organism:	Yersinia pestis CO92
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218928272, gi....

Description	E-value	Query Range	Subject Range
gi\|152960846, gi... - gi\|77632097\|ref\|ZP_00794683.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia pseudotuberculosis...	154.0	[0..4]	[116..1]
gi\|27359954, gi\|... - gi\|27363837\|ref\|NP_759365.1\| small protein A [Vibrio vulnificus CMCP6], gi\|27359954\|gb\|AAO08892.1\|AE...	154.0	[0..4]	[116..1]
gi\|121726019, gi... - gi\|121726019\|ref\|ZP_01679318.1\| small protein A [Vibrio cholerae V52], gi\|121631501\|gb\|EAX63871.1\| s... gi\|121550052, gi... - gi\|121585689\|ref\|ZP_01675484.1\| small protein A [Vibrio cholerae 2740-80], gi\|121550052\|gb\|EAX60068.... gi\|153818051, gi... - gi\|153818051\|ref\|ZP_01970718.1\| small protein A [Vibrio cholerae NCTC 8457], gi\|126511397\|gb\|EAZ7399... gi\|124117549, gi... - gi\|153224620\|ref\|ZP_01954527.1\| small protein A [Vibrio cholerae MAK 757], gi\|124117549\|gb\|EAY36292.... gi\|153822049, gi... - gi\|229510790\|ref\|ZP_04400269.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|146315440, gi... - gi\|227117221\|ref\|YP_002819117.1\| small protein A [Vibrio cholerae O395], gi\|227012671\|gb\|ACP08881.1\|... gi\|11356167 - gi\|11356167\|pir\|\|F82272 small protein A VC0851 [imported] - Vibrio cholerae (strain N16961 serogroup... gi\|229505539, gi... - gi\|229505539\|ref\|ZP_04395049.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|227008915, gi... - gi\|227081027\|ref\|YP_002809578.1\| small protein A [Vibrio cholerae M66-2], gi\|227008915\|gb\|ACP05127.1... gi\|229344626, gi... - gi\|229517911\|ref\|ZP_04407355.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229349938, gi... - gi\|229513045\|ref\|ZP_04402511.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229339055, gi... - gi\|229525474\|ref\|ZP_04414879.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|229339707, gi... - gi\|229523344\|ref\|ZP_04412751.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane pr... gi\|254847988, gi... - gi\|254847988\|ref\|ZP_05237338.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254843693\|... gi\|9655303, gi\|1... - gi\|9655303\|gb\|AAF94013.1\| small protein A [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1564086... gi\|229608559, gi... - gi\|229608559\|ref\|YP_002879207.1\| lipoprotein SmpA a component of the essential YaeT outer-membrane p...	153.0	[0..1]	[116..15]
gi\|167419608, gi... - gi\|167419608\|ref\|ZP_02311361.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Orientalis str... gi\|167399779, gi... - gi\|167399779\|ref\|ZP_02305297.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Antiqua str. U... gi\|166211505, gi... - gi\|166211505\|ref\|ZP_02237540.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Antiqua str. B... gi\|165989506, gi... - gi\|166011558\|ref\|ZP_02232456.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Antiqua str. E... gi\|229013126 - gi\|229013126\|ref\|NP_670375.2\| hypothetical protein y3076 [Yersinia pestis KIM] gi\|186697561, gi... - gi\|186894535\|ref\|YP_001871647.1\| hypothetical protein YPTS_1215 [Yersinia pseudotuberculosis PB1/+],... gi\|169751733, gi... - gi\|170025199\|ref\|YP_001721704.1\| hypothetical protein YPK_2977 [Yersinia pseudotuberculosis YPIII], ... gi\|229310104 - gi\|229310104\|ref\|YP_069673.2\| hypothetical protein YPTB1138 [Yersinia pseudotuberculosis IP 32953] gi\|167056709, gi... - gi\|167423860\|ref\|ZP_02315613.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Mediaevalis st... gi\|229220782 - gi\|229220782\|ref\|NP_992425.2\| hypothetical protein YP_1052 [Yersinia pestis biovar Microtus str. 910... gi\|229843143, gi... - gi\|229843143\|ref\|ZP_04463289.1\| Outer membrane lipoprotein OmlA [Yersinia pestis biovar Orientalis s... gi\|229697405, gi... - gi\|229841039\|ref\|ZP_04461198.1\| Outer membrane lipoprotein OmlA [Yersinia pestis biovar Orientalis s... gi\|229893981, gi... - gi\|229893981\|ref\|ZP_04509167.1\| Outer membrane lipoprotein OmlA [Yersinia pestis Pestoides A], gi\|22... gi\|165923692, gi... - gi\|165924632\|ref\|ZP_02220464.1\| lipoprotein, SmpA/OmlA family [Yersinia pestis biovar Orientalis str... gi\|162418747, gi... - gi\|162418747\|ref\|YP_001605901.1\| hypothetical protein YpAngola_A1375 [Yersinia pestis Angola], gi\|16... gi\|108776702, gi... - gi\|229903495\|ref\|ZP_04518608.1\| Outer membrane lipoprotein OmlA [Yersinia pestis Nepal516], gi\|22967... gi\|108778492, gi... - gi\|108806579\|ref\|YP_650495.1\| hypothetical protein YPA_0582 [Yersinia pestis Antiqua], gi\|108778492\|... gi\|165913783, gi... - gi\|89105211\|ref\|ZP_01177735.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia pestis biovar Orie... gi\|145599858, gi... - gi\|145599858\|ref\|YP_001163934.1\| hypothetical protein YPDSF_2593 [Yersinia pestis Pestoides F], gi\|1...	152.0	[0..4]	[116..1]
gi\|77958606, gi\|... - gi\|77958606\|ref\|ZP_00822637.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia bercovieri ATCC 43... gi\|77963359 - gi\|77963359\|ref\|ZP_00827169.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia mollaretii ATCC 43...	152.0	[0..4]	[116..1]
gi\|218352972, gi... - gi\|218696240\|ref\|YP_002403907.1\| hypothetical protein EC55989_2905 [Escherichia coli 55989], gi\|2183... gi\|218371114, gi... - gi\|218701128\|ref\|YP_002408757.1\| hypothetical protein ECIAI39_2820 [Escherichia coli IAI39], gi\|2183... gi\|218433214, gi... - gi\|218706117\|ref\|YP_002413636.1\| hypothetical protein ECUMN_2941 [Escherichia coli UMN026], gi\|21843... gi\|209157722, gi... - gi\|209396322\|ref\|YP_002272086.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4115... gi\|209913350, gi... - gi\|209920091\|ref\|YP_002294175.1\| hypothetical protein ECSE_2900 [Escherichia coli SE11], gi\|20991335... gi\|215266038, gi... - gi\|215487966\|ref\|YP_002330397.1\| hypothetical protein E2348C_2905 [Escherichia coli O127:H6 str. E23... gi\|217319717, gi... - gi\|217327350\|ref\|ZP_03443433.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. TW14588... gi\|218547865, gi... - gi\|218547865\|ref\|YP_002381656.1\| hypothetical protein EFER_0456 [Escherichia fergusonii ATCC 35469],... gi\|218555196, gi... - gi\|218555196\|ref\|YP_002388109.1\| hypothetical protein ECIAI1_2738 [Escherichia coli IAI1], gi\|218361... gi\|218366305, gi... - gi\|218559536\|ref\|YP_002392449.1\| hypothetical protein ECS88_2803 [Escherichia coli S88], gi\|21836630... gi\|218428298, gi... - gi\|218690734\|ref\|YP_002398946.1\| hypothetical protein ECED1_3055 [Escherichia coli ED1a], gi\|2184282... gi\|254593962, gi... - gi\|254794562\|ref\|YP_003079399.1\| small membrane lipoprotein [Escherichia coli O157:H7 str. TW14359],... gi\|254037692, gi... - gi\|254037692\|ref\|ZP_04871750.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683931... gi\|253772490, gi... - gi\|253772490\|ref\|YP_003035321.1\| SmpA/OmlA domain protein [Escherichia coli BL21(DE3)], gi\|253323534... gi\|242378211, gi... - gi\|251785938\|ref\|YP_003000242.1\| hypothetical protein B21_02469 [Escherichia coli BL21], gi\|24237821... gi\|238863559, gi... - gi\|238901776\|ref\|YP_002927572.1\| small membrane lipoprotein [Escherichia coli BW2952], gi\|238863559\|... gi\|237706795, gi... - gi\|237706795\|ref\|ZP_04537276.1\| small membrane lipoprotein [Escherichia sp. 3_2_53FAA], gi\|226899835... gi\|229774938 - gi\|229774938\|ref\|YP_690236.2\| hypothetical protein SFV_2854 [Shigella flexneri 5 str. 8401] gi\|227834823, gi... - gi\|227888183\|ref\|ZP_04005988.1\| SmpA family lipoprotein [Escherichia coli 83972], gi\|227834823\|gb\|EE... gi\|168789519, gi... - gi\|189370877\|gb\|EDU89293.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189377192, gi... - gi\|189377192\|gb\|EDU95608.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC508], gi\|... gi\|170019107, gi... - gi\|170019107\|ref\|YP_001724061.1\| hypothetical protein EcolC_1067 [Escherichia coli ATCC 8739], gi\|16... gi\|170082219, gi... - gi\|170082219\|ref\|YP_001731539.1\| small membrane lipoprotein [Escherichia coli str. K-12 substr. DH10... gi\|195939668 - gi\|195939668\|ref\|ZP_03085050.1\| hypothetical protein EscherichcoliO157_25235 [Escherichia coli O157:... gi\|208729004, gi... - gi\|208809203\|ref\|ZP_03251540.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4206]... gi\|208814447, gi... - gi\|208814447\|ref\|ZP_03255776.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4045]... gi\|208740776, gi... - gi\|208820653\|ref\|ZP_03260973.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4042]... BAME_SHIDS - Outer membrane protein assembly factor BamE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=bam... gi\|161986469 - gi\|161986469\|ref\|YP_311625.2\| hypothetical protein SSON_2773 [Shigella sonnei Ss046] gi\|168752577, gi... - gi\|188013610\|gb\|EDU51732.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4113], gi... gi\|168755359, gi... - gi\|189357325\|gb\|EDU75744.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4401], gi... gi\|189367260, gi... - gi\|189367260\|gb\|EDU85676.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4501], gi... gi\|168768704, gi... - gi\|189362052\|gb\|EDU80471.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4486], gi... gi\|168774857, gi... - gi\|187769545\|gb\|EDU33389.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4196], gi... gi\|189003428, gi... - gi\|189003428\|gb\|EDU72414.1\| lipoprotein, SmpA/OmlA family [Escherichia coli O157:H7 str. EC4076], gi... SMPA_ECOL6 - Small protein A OS=Escherichia coli O6 GN=smpA PE=3 SV=1 EG10952 - lipoprotein component of BamABCDE OM biogenesis complex / Lipoprotein stabilizer of BamABCDE OM biog... gi\|157156994, gi... - gi\|75187364\|ref\|ZP_00700631.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli E24377A], ... gi\|157162092, gi... - gi\|75196630\|ref\|ZP_00706700.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli HS], gi\|15... gi\|194427922, gi... - gi\|75210858\|ref\|ZP_00710982.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli B171], gi\|... gi\|190902849, gi... - gi\|75229734\|ref\|ZP_00716264.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli B7A], gi\|1... gi\|190908368, gi... - gi\|75241602\|ref\|ZP_00725439.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli F11], gi\|1... gi\|75255985, gi\|... - gi\|75255985\|ref\|ZP_00727709.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli E22], gi\|1... SMPA_ECOLI - Small protein A precursor - Escherichia coli gi\|188495950, gi... - gi\|75513222\|ref\|ZP_00735664.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli 53638], gi... EG10952 - lipoprotein component of BamABCDE OM biogenesis complex / Lipoprotein stabilizer of BamABCDE OM biog... gi\|24053063, gi\|... - ref\|NP_708464.1\| Small protein A precursor [Shigella flexneri 2a str. 301], gb\|AAN44171.1\| Small pr... gi\|91073526, gi\|... - gi\|91211952\|ref\|YP_541938.1\| hypothetical protein UTI89_C2951 [Escherichia coli UTI89], gi\|91073526\|... gi\|51773742 - gi\|51773742\|emb\|CAH23267.1\| small membrane protein A [Bacteriophage CP-1639] gi\|110642777, gi... - gi\|110642777\|ref\|YP_670507.1\| hypothetical protein ECP_2617 [Escherichia coli 536], gi\|110344369\|gb\|... gi\|117624838, gi... - gi\|117624838\|ref\|YP_853751.1\| hypothetical protein APECO1_3917 [Escherichia coli APEC O1], gi\|115513... BAME_ECOL6 - Outer membrane protein assembly factor BamE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|124500907, gi... - gi\|124528015\|ref\|ZP_01699368.1\| SmpA/OmlA domain protein [Escherichia coli B], gi\|124500907\|gb\|EAY48... BAME_SHIFL - Outer membrane protein assembly factor BamE OS=Shigella flexneri GN=bamE PE=3 SV=1 gi\|83569991, gi\|... - gi\|83569991\|ref\|ZP_00921439.1\| COG2913: Small protein A (tmRNA-binding) [Shigella dysenteriae 1012],... gi\|194439425, gi... - gi\|83585179\|ref\|ZP_00923830.1\| COG2913: Small protein A (tmRNA-binding) [Escherichia coli 101-1], gi... gi\|89109417, gi\|... - gi\|89109417\|ref\|AP_003197.1\| small membrane lipoprotein [Escherichia coli str. K-12 substr. W3110], ...	152.0	[0..4]	[116..1]
BAME_VIBF1 - Outer membrane protein assembly factor BamE OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=bamE ...	152.0	[0..4]	[116..1]
gi\|37679005, gi\|... - gi\|37679005\|ref\|NP_933614.1\| small protein A [Vibrio vulnificus YJ016], gi\|37197747\|dbj\|BAC93585.1\| ...	152.0	[0..4]	[116..1]
gi\|77974740 - gi\|77974740\|ref\|ZP_00830279.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia frederiksenii ATCC... gi\|77978426 - gi\|77978426\|ref\|ZP_00833855.1\| COG2913: Small protein A (tmRNA-binding) [Yersinia intermedia ATCC 29...	151.0	[0..4]	[116..1]
gi\|75831931, gi\|... - gi\|75831931\|ref\|ZP_00761190.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae MO10], gi\|1... SMPA_VIBCH - Small protein A homolog OS=Vibrio cholerae GN=smpA PE=3 SV=1 BAME_VIBC3 - Outer membrane protein assembly factor BamE OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Clas... gi\|75822957, gi\|... - gi\|75822957\|ref\|ZP_00752502.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae RC385], gi\|... gi\|75818218, gi\|... - gi\|75818218\|ref\|ZP_00748414.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae V51], gi\|11... BAME_VIBCH - Outer membrane protein assembly factor BamE OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El T... gi\|75816111 - gi\|75816111\|ref\|ZP_00746591.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae V52]	151.0	[0..4]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITMRCKMLT AAAVMLAMLT AGCSTLEKVV YRPDINQGNY LSPIDASKIH KGMTQQQVAY  60
   61 TLGTPMLQDP FGTQTWFYVF RQQPGHEKIT QQTLTLTFDS SGVLTDIKNE PALTGS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.721246
Match:	PF04355.4
Description:	No description for PF04355.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.912	N/A	N/A	d.17.4	NTF2-like
View	Download	0.730	N/A	N/A	d.17.4	NTF2-like
View	Download	0.725	N/A	N/A	d.17.4	NTF2-like
View	Download	0.725	N/A	N/A	d.17.4	NTF2-like
View	Download	0.723	N/A	N/A	d.17.4	NTF2-like
View	Download	0.717	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.647	N/A	N/A	d.17.4	NTF2-like
View	Download	0.618	N/A	N/A	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.556	N/A	N/A	d.17.4	NTF2-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits