YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45441085, gi\|...
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45441085, gi|....

Description	E-value	Query Range	Subject Range
gi\|186697805, gi... - gi\|186894779\|ref\|YP_001871891.1\| hypothetical protein YPTS_1462 [Yersinia pseudotuberculosis PB1/+],... gi\|117674179, gi... - gi\|77632324\|ref\|ZP_00794910.1\| hypothetical protein YpseI_01003724 [Yersinia pseudotuberculosis IP 3... Q66CN8\|Q66CN8_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|51588987, gi\|... - gi\|51595705\|ref\|YP_069896.1\| hypothetical protein YPTB1365 [Yersinia pseudotuberculosis IP 32953], g... gi\|170024951, gi... - gi\|170024951\|ref\|YP_001721456.1\| hypothetical protein YPK_2726 [Yersinia pseudotuberculosis YPIII], ...	2.0E-63	[1..154]	[1..154]
gi\|115512162, gi... - gi\|117623038\|ref\|YP_851951.1\| hypothetical protein APECO1_1235 [Escherichia coli APEC O1], gi\|115512... gi\|124527115, gi... - gi\|124527115\|ref\|ZP_01698952.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501460\|gb... gi\|110342652, gi... - gi\|110641060\|ref\|YP_668790.1\| hypothetical protein ECP_0872 [Escherichia coli 536], gi\|110342652\|gb\|... gi\|110804855, gi... - gi\|110804855\|ref\|YP_688375.1\| hypothetical protein SFV_0843 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|4062441, gi\|8... - gi\|89107709\|ref\|AP_001489.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|91209892, gi\|... - gi\|91209892\|ref\|YP_539878.1\| hypothetical protein UTI89_C0861 [Escherichia coli UTI89], gi\|91071466\|... gi\|15830192, gi\|... - gi\|15830192\|ref\|NP_308965.1\| hypothetical protein ECs0938 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|218704282, gi... - gi\|218704282\|ref\|YP_002411801.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218369220, gi... - gi\|218699234\|ref\|YP_002406863.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|209397452, gi... - gi\|209397452\|ref\|YP_002269528.1\| hypothetical protein ECH74115_1014 [Escherichia coli O157:H7 str. E... gi\|208822254, gi... - gi\|208822254\|ref\|ZP_03262573.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|217322504, gi... - gi\|217326283\|ref\|ZP_03442367.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|215485989, gi... - gi\|215485989\|ref\|YP_002328420.1\| predicted inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|218364531, gi... - gi\|218557762\|ref\|YP_002390675.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218553444, gi... - gi\|218553444\|ref\|YP_002386357.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218351064, gi... - gi\|218694332\|ref\|YP_002401999.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218688640, gi... - gi\|218688640\|ref\|YP_002396852.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|227838930, gi... - gi\|227884178\|ref\|ZP_04001983.1\| membrane protein [Escherichia coli 83972], gi\|227838930\|gb\|EEJ49396.... gi\|237707178, gi... - gi\|237707178\|ref\|ZP_04537659.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238900117, gi... - gi\|238900117\|ref\|YP_002925913.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|253977088, gi... - gi\|254287781\|ref\|YP_003053529.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|253972874, gi... - gi\|254160973\|ref\|YP_003044081.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|254792054, gi... - gi\|254792054\|ref\|YP_003076891.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|56383296, gi\|... - gi\|56479745\|ref\|NP_706738.2\| hypothetical protein SF0812 [Shigella flexneri 2a str. 301], gi\|5638329... gi\|189377731, gi... - gi\|189377731\|gb\|EDU96147.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|168787080, gi... - gi\|189373193\|gb\|EDU91609.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|82776063, gi\|... - gi\|82776063\|ref\|YP_402410.1\| hypothetical protein SDY_0737 [Shigella dysenteriae Sd197], gi\|81240211... gi\|170080517, gi... - gi\|170080517\|ref\|YP_001729837.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|81244757, gi\|... - gi\|82543346\|ref\|YP_407293.1\| hypothetical protein SBO_0792 [Shigella boydii Sb227], gi\|81244757\|gb\|A... gi\|170020739, gi... - gi\|170020739\|ref\|YP_001725693.1\| hypothetical protein EcolC_2738 [Escherichia coli ATCC 8739], gi\|16... gi\|195936903 - gi\|195936903\|ref\|ZP_03082285.1\| inner membrane protein [Escherichia coli O157:H7 str. EC4024] gi\|194433136, gi... - gi\|194433136\|ref\|ZP_03065418.1\| putative membrane protein [Shigella dysenteriae 1012], gi\|194418633\|... gi\|208732255, gi... - gi\|208815607\|ref\|ZP_03256786.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|208809479, gi... - gi\|208809479\|ref\|ZP_03251816.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|194428228, gi... - gi\|75210546\|ref\|ZP_00710694.1\| hypothetical protein EcolB_01002276 [Escherichia coli B171], gi\|19442... gi\|193069363, gi... - gi\|75236085\|ref\|ZP_00720209.1\| hypothetical protein EcolE1_01002344 [Escherichia coli E110019], gi\|1... gi\|157081372, gi... - gi\|75189898\|ref\|ZP_00703165.1\| hypothetical protein EcolE_01003190 [Escherichia coli E24377A], gi\|15... gi\|189356236, gi... - gi\|189356236\|gb\|EDU74655.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|157066060, gi... - gi\|75195047\|ref\|ZP_00705117.1\| hypothetical protein EcolH_01000836 [Escherichia coli HS], gi\|1571603... gi\|188015717, gi... - gi\|188015717\|gb\|EDU53839.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|188493662, gi... - gi\|75512864\|ref\|ZP_00735356.1\| hypothetical protein Ecol5_01003059 [Escherichia coli 53638], gi\|1884... gi\|168767369, gi... - gi\|189363339\|gb\|EDU81758.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|73854879, gi\|... - gi\|74311402\|ref\|YP_309821.1\| hypothetical protein SSON_0843 [Shigella sonnei Ss046], gi\|73854879\|gb\|... gi\|189366481, gi... - gi\|189366481\|gb\|EDU84897.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|190907576, gi... - gi\|75240922\|ref\|ZP_00724811.1\| hypothetical protein EcolF_01001992 [Escherichia coli F11], gi\|191172... gi\|189003125, gi... - gi\|189003125\|gb\|EDU72111.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|75257544, gi\|... - gi\|75257544\|ref\|ZP_00729041.1\| hypothetical protein EcolE2_01002597 [Escherichia coli E22], gi\|19306... gi\|187768233, gi... - gi\|187768233\|gb\|EDU32077.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|194438465, gi... - gi\|83586171\|ref\|ZP_00924808.1\| hypothetical protein Ecol1_01002698 [Escherichia coli 101-1], gi\|1944... YBJO_ECOL6 - Inner membrane protein ybjO OS=Escherichia coli O6 GN=ybjO PE=3 SV=1 gi\|187731461, gi... - gi\|75178338\|ref\|ZP_00698392.1\| hypothetical protein SboyB_01001706 [Shigella boydii BS512], gi\|18773... EG13684 - DUF2593 family inner membrane protein / Inner membrane protein, DUF2593 family, function unknown YBJO_ECOL6 - Inner membrane protein YbjO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybjO P... YBJO_SHIFL - Inner membrane protein YbjO OS=Shigella flexneri GN=ybjO PE=3 SV=1 YBJO_ECO57 - Inner membrane protein YbjO OS=Escherichia coli O157:H7 GN=ybjO PE=3 SV=1 gi\|30040585, gi\|... - gi\|30062340\|ref\|NP_836511.1\| hypothetical protein S0854 [Shigella flexneri 2a str. 2457T], gi\|300405... YBJO_ECOLI - Inner membrane protein ybjO - Escherichia coli gi\|15800610, gi\|... - gi\|15800610\|ref\|NP_286624.1\| hypothetical protein Z1085 [Escherichia coli O157:H7 EDL933], gi\|125138... EG13684 - DUF2593 family inner membrane protein / Inner membrane protein, DUF2593 family, function unknown	2.0E-56	[2..142]	[10..152]
gi\|191166180, gi... - gi\|75230708\|ref\|ZP_00717179.1\| hypothetical protein EcolB7_01001168 [Escherichia coli B7A], gi\|19116...	6.0E-56	[2..142]	[10..152]
gi\|62127077, gi\|... - gi\|62179444\|ref\|YP_215861.1\| hypothetical protein SC0874 [Salmonella enterica subsp. enterica serova... gi\|224582731, gi... - gi\|224582731\|ref\|YP_002636529.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|161614855, gi... - gi\|161614855\|ref\|YP_001588820.1\| hypothetical protein SPAB_02608 [Salmonella enterica subsp. enteric...	1.0E-53	[1..129]	[34..164]
gi\|197094429, gi... - gi\|197362952\|ref\|YP_002142589.1\| hypothetical protein SSPA1751 [Salmonella enterica subsp. enterica ... gi\|16419390, gi\|... - gi\|16764243\|ref\|NP_459858.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164193... gi\|198242106, gi... - gi\|198242106\|ref\|YP_002214846.1\| inner membrane protein YbjO [Salmonella enterica subsp. enterica se... gi\|56128286, gi\|... - gi\|56414029\|ref\|YP_151104.1\| hypothetical protein SPA1881 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ybjO] [protein=putative inner membrane protein] [protein_id=YP_005236623.1] [location=953649..... gi\|238913399 - gi\|238913399\|ref\|ZP_04657236.1\| hypothetical protein SentesTe_20041 [Salmonella enterica subsp. ente... gi\|205271913, gi... - gi\|205352132\|ref\|YP_002225933.1\| hypothetical protein SG0862 [Salmonella enterica subsp. enterica se... gi\|207856314, gi... - gi\|207856314\|ref\|YP_002242965.1\| hypothetical protein SEN0827 [Salmonella enterica subsp. enterica s...	3.0E-51	[1..129]	[4..134]
gi\|213647856 - gi\|213647856\|ref\|ZP_03377909.1\| hypothetical protein SentesTy_11564 [Salmonella enterica subsp. ente... gi\|213428047 - gi\|213428047\|ref\|ZP_03360797.1\| hypothetical protein SentesTyphi_22175 [Salmonella enterica subsp. e... gi\|213052507 - gi\|213052507\|ref\|ZP_03345385.1\| hypothetical protein Salmoneentericaenterica_06026 [Salmonella enter... gi\|214000348 - gi\|214000348\|ref\|ZP_03411083.1\| hypothetical protein Salmonellentericaenterica_06816 [Salmonella ent... gi\|16502084, gi\|... - gi\|25332836\|pir\|\|AF0606 probable membrane protein STY0914 [imported] - Salmonella enterica subsp. en... gi\|29142436, gi\|... - gi\|29142436\|ref\|NP_805778.1\| hypothetical protein t2015 [Salmonella enterica subsp. enterica serovar... gi\|16759791 - gi\|16759791\|ref\|NP_455408.1\| hypothetical protein STY0914 [Salmonella enterica subsp. enterica serov...	3.0E-51	[1..129]	[4..134]
gi\|77976848 - gi\|77976848\|ref\|ZP_00832316.1\| COG1174: ABC-type proline/glycine betaine transport systems, permease...	7.0E-48	[11..151]	[21..161]
gi\|238789654, gi... - gi\|77974801\|ref\|ZP_00830339.1\| COG1174: ABC-type proline/glycine betaine transport systems, permease...	3.0E-40	[13..151]	[1..141]
gi\|238714179, gi... - gi\|77957672\|ref\|ZP_00821722.1\| hypothetical protein YberA_01002140 [Yersinia bercovieri ATCC 43970],...	1.0E-39	[11..151]	[16..156]
gi\|238720271, gi... - gi\|77960544\|ref\|ZP_00824411.1\| hypothetical protein YmolA_01003210 [Yersinia mollaretii ATCC 43969],...	5.0E-39	[12..151]	[17..156]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSFSSSAA TPVPVVIGGT AIIATRIIGV LLLVAELGFS GVSDFISDSL QRWDTGLIFF  60
   61 ASIVLLLLDM MCGVAVCHRR NWARWYYLIC QLIIMIYLLM ASLNWLEPDI FRIEGDSGAE 120
  121 ILHSLLLQKI PDVVIIGLLF FPWHRYFPQS KMSV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits