YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25303003
Organism:	Yersinia pestis
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25303003.

Description	E-value	Query Range	Subject Range
gi\|77961125 - gi\|77961125\|ref\|ZP_00824971.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia mollaretii ATCC ...	2.0E-43	[1..132]	[1..132]
gi\|77957934 - gi\|77957934\|ref\|ZP_00821977.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia bercovieri ATCC ...	2.0E-43	[1..132]	[1..132]
Q66BQ9\|Q66BQ9_YERPS - Flagellar protein FliS - Yersinia pseudotuberculosis gi\|152959429, gi... - gi\|77628909\|ref\|ZP_00791495.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia pseudotuberculos... gi\|169751142, gi... - gi\|170024608\|ref\|YP_001721113.1\| flagellar protein FliS [Yersinia pseudotuberculosis YPIII], gi\|1697... gi\|186698178, gi... - gi\|186895152\|ref\|YP_001872264.1\| flagellar protein FliS [Yersinia pseudotuberculosis PB1/+], gi\|1866... gi\|51596047, gi\|... - gi\|51596047\|ref\|YP_070238.1\| flagellar protein FliS [Yersinia pseudotuberculosis IP 32953], gi\|51589...	1.0E-42	[1..132]	[1..132]
gi\|77975698 - gi\|77975698\|ref\|ZP_00831232.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia frederiksenii AT...	3.0E-42	[1..131]	[1..131]
gi\|77979910 - gi\|77979910\|ref\|ZP_00835326.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia intermedia ATCC ...	7.0E-42	[1..131]	[1..131]
gi\|18642461 - gi\|18642461\|emb\|CAD22872.1\| FliS protein [Erwinia chrysanthemi]	2.0E-41	[1..131]	[1..131]
gi\|49611188, gi\|... - gi\|50120662\|ref\|YP_049829.1\| flagellar protein FliS [Pectobacterium atrosepticum SCRI1043], gi\|49611...	1.0E-40	[1..131]	[1..131]
FLIS_VIBCH - Flagellar protein fliS OS=Vibrio cholerae GN=fliS PE=3 SV=1 gi\|124122827, gi... - gi\|153801650\|ref\|ZP_01956236.1\| flagellar protein FliS [Vibrio cholerae MZO-3], gi\|124122827\|gb\|EAY4... gi\|126510463, gi... - gi\|153818968\|ref\|ZP_01971635.1\| flagellar protein FliS [Vibrio cholerae NCTC 8457], gi\|126510463\|gb\|... gi\|126519868, gi... - gi\|229511986\|ref\|ZP_04401465.1\| flagellar biosynthesis protein FliS [Vibrio cholerae B33], gi\|229351... gi\|227010151, gi... - gi\|227082263\|ref\|YP_002810814.1\| flagellar protein FliS [Vibrio cholerae M66-2], gi\|227010151\|gb\|ACP... gi\|254844929, gi... - gi\|75830327\|ref\|ZP_00759607.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae MO10], gi... gi\|229355282, gi... - gi\|229507777\|ref\|ZP_04397282.1\| flagellar biosynthesis protein FliS [Vibrio cholerae BX 330286], gi\|... gi\|229513789, gi... - gi\|229513789\|ref\|ZP_04403251.1\| flagellar biosynthesis protein FliS [Vibrio cholerae TMA 21], gi\|229... gi\|116218029, gi... - gi\|75824658\|ref\|ZP_00754106.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae RC385], g... gi\|229519122, gi... - gi\|229519122\|ref\|ZP_04408565.1\| flagellar biosynthesis protein FliS [Vibrio cholerae RC9], gi\|229343... gi\|75827441, gi\|... - gi\|75827441\|ref\|ZP_00756876.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae O395], gi... gi\|229341016, gi... - gi\|229522091\|ref\|ZP_04411508.1\| flagellar biosynthesis protein FliS [Vibrio cholerae TM 11079-80], g... gi\|75816881, gi\|... - gi\|75816881\|ref\|ZP_00747339.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae V52], gi\|... gi\|229528850, gi... - gi\|229528850\|ref\|ZP_04418240.1\| flagellar biosynthesis protein FliS [Vibrio cholerae 12129(1)], gi\|2... gi\|75818879, gi\|... - gi\|75818879\|ref\|ZP_00748994.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio cholerae V51], gi\|... gi\|229369977, gi... - gi\|229607322\|ref\|YP_002877970.1\| flagellar biosynthesis protein FliS [Vibrio cholerae MJ-1236], gi\|2... gi\|197751280, gi... - gi\|254291375\|ref\|ZP_04962168.1\| flagellar protein FliS [Vibrio cholerae AM-19226], gi\|197751280\|ref\|... FLIS_VIBCH - Flagellar protein FliS OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=f... gi\|121549006, gi... - gi\|121586839\|ref\|ZP_01676621.1\| flagellar protein FliS [Vibrio cholerae 2740-80], gi\|121549006\|gb\|EA... gi\|153828630, gi... - gi\|153828630\|ref\|ZP_01981297.1\| flagellar protein FliS [Vibrio cholerae 623-39], gi\|148875901\|gb\|EDL... gi\|124116083, gi... - gi\|153213283\|ref\|ZP_01948695.1\| flagellar protein FliS [Vibrio cholerae 1587], gi\|124116083\|gb\|EAY34... gi\|149740760, gi... - gi\|153825609\|ref\|ZP_01978276.1\| flagellar protein FliS [Vibrio cholerae MZO-2], gi\|149740760\|gb\|EDM5... gi\|153223612, gi... - gi\|153223612\|ref\|ZP_01953966.1\| flagellar protein FliS [Vibrio cholerae MAK 757], gi\|124118078\|gb\|EA...	8.0E-40	[3..130]	[1..127]
FLIS_SALTY - Flagellar protein fliS OS=Salmonella typhimurium GN=fliS PE=1 SV=1 FLIS_SALTY - Flagellar protein FliS OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fliS PE=1 ... gi\|197288027, gi... - gi\|197288027\|gb\|EDY27414.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Schw... gi\|167993534, gi... - gi\|205328370\|gb\|EDZ15134.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar 4,[5... gi\|205322665, gi... - gi\|205322665\|gb\|EDZ10504.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Sain... gi\|161362836, gi... - gi\|161613472\|ref\|YP_001587437.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|168823003, gi... - gi\|205340686\|gb\|EDZ27450.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Welt... gi\|168462499, gi... - gi\|195633976\|gb\|EDX52328.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Newp... gi\|205351261, gi... - gi\|205351261\|gb\|EDZ37892.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Hada... gi\|205336358, gi... - gi\|205336358\|gb\|EDZ23122.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Heid... lcl\|NC_016856.1_... - [gene=fliS] [protein=flagellar protein FliS] [protein_id=YP_005237930.1] [location=2062225..2062632] FLIS_SALTY - Flagellar protein fliS OS=Salmonella typhimurium GN=fliS PE=1 SV=1 gi\|206708329, gi... - gi\|207856526\|ref\|YP_002243177.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|205352345, gi... - gi\|205352345\|ref\|YP_002226146.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|204931038, gi... - gi\|204931038\|ref\|ZP_03221864.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|194709582, gi... - gi\|194734080\|ref\|YP_002114994.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|194471520, gi... - gi\|194471520\|ref\|ZP_03077504.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|62128168, gi\|... - gi\|62180535\|ref\|YP_216952.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Cho... gi\|194409242, gi... - gi\|194450938\|ref\|YP_002046011.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|194401770, gi... - gi\|194443107\|ref\|YP_002041225.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|200389330, gi... - gi\|200389330\|ref\|ZP_03215941.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|197938576, gi... - gi\|198244060\|ref\|YP_002215126.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|197362052, gi... - gi\|197362052\|ref\|YP_002141689.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|197242604, gi... - gi\|197264349\|ref\|ZP_03164423.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|56413126, gi\|... - gi\|56413126\|ref\|YP_150201.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Par... gi\|238912466 - gi\|238912466\|ref\|ZP_04656303.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ...	1.0E-39	[1..128]	[1..128]
gi\|29141403, gi\|... - gi\|29141403\|ref\|NP_804745.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Typ... gi\|16760905 - gi\|16760905\|ref\|NP_456522.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Typ... gi\|25303004, gi\|... - gi\|25303004\|pir\|\|AB0751 flagellar protein FliS [imported] - Salmonella enterica subsp. enterica sero... gi\|214001882 - gi\|214001882\|ref\|ZP_03412617.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213580924 - gi\|213580924\|ref\|ZP_03362750.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213426349 - gi\|213426349\|ref\|ZP_03359099.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213649070 - gi\|213649070\|ref\|ZP_03379123.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213613358 - gi\|213613358\|ref\|ZP_03371184.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213053504 - gi\|213053504\|ref\|ZP_03346382.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ...	3.0E-39	[1..128]	[1..128]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKRSGSQAY AQVGLESGVM SASPHQLIVM LFDGAQSALI RARILMSQGN IPAKGAAISK  60
   61 AIDIINNGLS AGLNLDKGGE MAENLSALYD YMSRRLLYAN LHNDEQAINE VSALLENIAD 120
  121 AWRQIGPNYQ PN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1vh6A
Description:	Crystal structure of a flagellar protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.31438572337508	bayes_pls_golite062009
protein binding	0.977368420595996	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: