YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16122366, gi\|...
Organism:	Yersinia pestis CO92
Length:	1067 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16122366, gi|....

Description	E-value	Query Range	Subject Range
gi\|9630485, gi\|7... - gi\|9630485\|ref\|NP_046916.1\| gp21 [Enterobacteria phage N15], pir\|\|T13107 tail tip fiber protein gp21...	0.0	[5..1067]	[6..1061]
gi\|116054370, gi... - gi\|32043836\|ref\|ZP_00141098.1\| COG4733: Phage-related protein, tail component [Pseudomonas aeruginos...	0.0	[3..1059]	[2..1095]
gi\|9634142, gi\|6... - gi\|9634142\|ref\|NP_037684.1\| gp24 [Enterobacteria phage HK022], gi\|6863134\|gb\|AAF30375.1\|AF069308_23 ...	0.0	[4..930]	[5..924]
gi\|26248996, gi\|... - gi\|26248996\|ref\|NP_755036.1\| putative tail component of prophage [Escherichia coli CFT073], gi\|26109...	0.0	[10..1047]	[2..1024]
gi\|194429905, gi... - gi\|75208868\|ref\|ZP_00709149.1\| COG4733: Phage-related protein, tail component [Escherichia coli B171...	0.0	[10..1047]	[2..1024]
gi\|107099611 - gi\|107099611\|ref\|ZP_01363529.1\| hypothetical protein PaerPA_01000625 [Pseudomonas aeruginosa PACS2]	0.0	[3..1059]	[2..1097]
gi\|126197096, gi... - gi\|84324138\|ref\|ZP_00972202.1\| COG4733: Phage-related protein, tail component [Pseudomonas aeruginos...	0.0	[3..1059]	[2..1097]
gi\|117623513, gi... - gi\|117623513\|ref\|YP_852426.1\| putative tail component of prophage [Escherichia coli APEC O1], gi\|115...	0.0	[10..1047]	[2..1024]
gi\|94413359, gi\|... - gi\|94413359\|ref\|ZP_01293245.1\| hypothetical protein PaerP_01004871 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[3..1059]	[2..1097]
gi\|11351088 - pir\|\|B83566 probable bacteriophage protein PA0641 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9946517, gi\|1... - gi\|9946517\|gb\|AAG04030.1\|AE004499_9 probable bacteriophage protein [Pseudomonas aeruginosa PAO1], gi...	0.0	[3..1059]	[2..1097]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKPIKGRK GGGSNATTPV ESPDSIQSTA RAKILIALGE GEFAGGLDGT NIYLDGTPIK  60
   61 NSDGTSNFTG VTWEYRPGTQ AQDYIQGMPN VENEITVNTE L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSDTPWVRSI TNTQLSATRV RLGWPSLQRQ ADNGDVGGYR IEYAVDVATD GGAYQTLLDT  60
   61 AIDGKTTTLY ERSHRINLPK ATAGWQVRTR RKTANANSGR IADKMNVEAI SEVIDAKLRY 120
  121 PNTALLYIEF DATQFQNIPI ISCEPKGRII RV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.522879
Match:	1va9A
Description:	Solution structure of the second FNIII domain of DSCAML1 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.431491932986215	bayes_pls_golite062009
protein binding	0.3642499004435	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [254-530]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTTYDPVTRT YSGVWDGSFK WAHTNNPAWV FYNIVLADRF GLGHRIEVSQ VDKWELYRIG  60
   61 QYCDQLIPDG RGGSGTEPRF TCDVYIQSQA EAFTVLRDLA AIFRGMTYWG NNQLCTLADM 120
  121 PRDVDYIFTR ASVIDGRFTY GGGSEKKRYT TAMVSWSDPA NNCQDAIEAV SDNDLVRRYG 180
  181 VNQLDMTAIG CIRQTEANRR GRWALLTNSK DRTVNFNVGL DGAIPLPGHI IGVADDMLSG 240
  241 RKMGGRISSV SGRNITLDRV ADVKAGDRLL VNLPNGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1cs6A
Description:	Axonin-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

Predicted Domain #4

Region A:
Residues: [531-1067]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQGRTVQVVN GKVITVTTAY SEVPAAESGW SVDADDLAIQ QYRVTGISDN DDNTYSISSV  60
   61 QHDPDKYERI DTGARIDERP ISVIPPGVQP PPTNVVIDSF SALSQGLAIT TLRVTWEPAA 120
  121 SAIAYEAEWR RDNGNWISAP RTSAQGFQVE GIYAGQYQAR VRAINPSEIS SIWANAQETT 180
  181 LNGKEGNPPM PVGFTATGIL FGITLNWGYP EGAEDALKTE IEYSLSADGT DAMLLSDVPH 240
  241 PQRNYTMQGL RAGQVFWFRA RIVDKSGNQS PWIDWVRGMS STDTSAILEA IGDDFINNTV 300
  301 AGQQLINDDF MNAEGILETA KANNASIWQQ WAQHGENKAG VIHLTTTVAD AERAFAEFET 360
  361 LVTATFEDQT AAIDQKMTAV VDANGASATY SLRAGLNYNG QFVSAGMVIG AEFINGVAKS 420
  421 SIGFTADQFI LLSGPTGNLF SPFAVVNGQV FMNDAFIAKA SIGRGKITDT LDSDNYVQGI 480
  481 SGLKLDFKNG NAEFNNVNLR GNITMDNTIN GIRTIVDYRG QRTYHANGQP AIICGYF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	2v5yA
Description:	No description for 2v5yA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: