YRC Public Data Repository - Protein Structure Prediction

Protein:	ARND_YERPE
Organism:	Yersinia pestis
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARND_YERPE.

Description	E-value	Query Range	Subject Range
ARND_PHOLL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Photorhabdus lumine... ARND_PHOLL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase arnD OS=Photorhabdus lumine...	3.0E-66	[1..296]	[1..296]
gi\|77980158 - gi\|77980158\|ref\|ZP_00835573.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia intermedia A...	5.0E-66	[1..299]	[1..299]
gi\|77959223 - gi\|77959223\|ref\|ZP_00823245.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia bercovieri A...	3.0E-65	[1..300]	[1..300]
gi\|77962214 - gi\|77962214\|ref\|ZP_00826037.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia mollaretii A...	1.0E-63	[1..300]	[1..300]
gi\|77975265 - gi\|77975265\|ref\|ZP_00830801.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia frederikseni...	2.0E-63	[1..301]	[1..301]
ARND_SALCH - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella cholerae... ARND_SALCH - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella cholerae...	2.0E-62	[1..296]	[1..295]
ARND_SALTY - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella typhimur... YFBH_SALTY - Uncharacterized protein yfbH OS=Salmonella typhimurium GN=yfbH PE=4 SV=1 lcl\|NC_016856.1_... - [gene=STM14_2838] [protein=putative cytoplasmic protein] [protein_id=YP_005238374.1] [location=24596... gi\|197240306, gi... - gi\|197262051\|ref\|ZP_03162125.1\| polysaccharide deacetylase domain protein [Salmonella enterica subsp... ARND_SALTY - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella typhimur... gi\|167992636, gi... - gi\|205329220\|gb\|EDZ15984.1\| polysaccharide deacetylase domain protein [Salmonella enterica subsp. en...	5.0E-62	[1..296]	[1..295]
gi\|213858060 - gi\|213858060\|ref\|ZP_03385031.1\| hypothetical protein SentesT_23475 [Salmonella enterica subsp. enter... gi\|16761226 - gi\|16761226\|ref\|NP_456843.1\| hypothetical protein STY2530 [Salmonella enterica subsp. enterica serov... gi\|213648588 - gi\|213648588\|ref\|ZP_03378641.1\| hypothetical protein SentesTy_15669 [Salmonella enterica subsp. ente... gi\|213427756 - gi\|213427756\|ref\|ZP_03360506.1\| hypothetical protein SentesTyphi_20510 [Salmonella enterica subsp. e... ARND_SALPA - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella paratyph... ARND_SALTI - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella typhi GN... ARND_SALPK - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella paratyph... gi\|29136704, gi\|... - gi\|29141078\|ref\|NP_804420.1\| hypothetical protein t0563 [Salmonella enterica subsp. enterica serovar... ARND_SALPA - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella paratyph...	7.0E-62	[1..297]	[1..296]
ARND_PSEU2 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Pseudomonas syringa...	5.0E-60	[6..295]	[5..293]
ARND_PSEPF - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Pseudomonas fluores...	8.0E-60	[6..296]	[5..294]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQVGLRIDV DTYRGTQYGV PSLLTVLEKH DIRASFFFSV GPDNMGRHLW RLFRPRFLWK  60
   61 MLRSNAASLY GWDILLAGTA WPGKKIAKDF GPLMKAAAMA GHEVGLHAWD HQGWQANVAS 120
  121 WSQQQLTEQV QRGVDTLQQS IGQPISCSAA AGWRADERVL AVKQQFDFSY NSDCRGTHPF 180
  181 RPLLPNGSLG SVQIPVTLPT YDEVVGGEVQ AENFNDFIID AILRDSGVSV YTIHAEVEGM 240
  241 SQAAMFEQLL MRAKQQDIEF CPLSKLLPSD LQLLPVGKVI RAAFPGREGW LGCQSDIKDA 300
  301 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: