YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51596882, gi\|...
Organism:	Yersinia pseudotuberculosis IP 32953
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51596882, gi|....

Description	E-value	Query Range	Subject Range
gi\|45442131, gi\|... - gi\|45442131\|ref\|NP_993670.1\| hypothetical protein YP_2341 [Yersinia pestis biovar Microtus str. 9100... gi\|167424647, gi... - gi\|167424647\|ref\|ZP_02316400.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|22125552, gi\|... - gi\|22125552\|ref\|NP_668975.1\| hypothetical protein y1657 [Yersinia pestis KIM], gi\|21958454\|gb\|AAM852... gi\|166205039, gi... - gi\|166213865\|ref\|ZP_02239900.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167422359, gi... - gi\|167422359\|ref\|ZP_02314112.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165925466, gi... - gi\|165925466\|ref\|ZP_02221298.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st...	4.0E-27	[1..102]	[14..115]
gi\|77636593 - gi\|77636593\|ref\|ZP_00798666.1\| COG4575: Uncharacterized conserved protein [Yersinia pestis Angola] gi\|117673157 - gi\|117673157\|ref\|ZP_01496215.1\| hypothetical protein YpseI_02001349 [Yersinia pseudotuberculosis IP ...	2.0E-26	[1..102]	[3..104]
gi\|49080298 - gi\|49080298\|gb\|AAT50001.1\| PA3040 [synthetic construct]	3.0E-23	[4..102]	[7..109]
gi\|194546998, gi... - gi\|254236013\|ref\|ZP_04929336.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|11347971 - pir\|\|A83265 conserved hypothetical protein PA3040 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|115586262, gi... - gi\|116051041\|ref\|YP_790132.1\| hypothetical protein PA14_24770 [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|152987184, gi... - gi\|152987184\|ref\|YP_001347471.1\| hypothetical protein PSPA7_2098 [Pseudomonas aeruginosa PA7], gi\|15... gi\|194552728, gi... - gi\|254241743\|ref\|ZP_04935065.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|218770983, gi... - gi\|218890760\|ref\|YP_002439624.1\| hypothetical protein PLES_20201 [Pseudomonas aeruginosa LESB58], gi... gi\|15598236, gi\|... - gi\|9949145\|gb\|AAG06428.1\|AE004729_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi...	4.0E-23	[4..102]	[7..109]
gi\|77384193, gi\|... - gi\|77460190\|ref\|YP_349697.1\| vesicle-fusing ATPase [Pseudomonas fluorescens Pf0-1], gi\|77384193\|gb\|A...	1.0E-22	[3..102]	[5..104]
gi\|67529815, gi\|... - gi\|67548851\|ref\|ZP_00426731.1\| protein of unknown function DUF883 [Burkholderia vietnamiensis G4], g...	1.0E-22	[8..102]	[6..100]
gi\|78065378, gi\|... - gi\|78065378\|ref\|YP_368147.1\| protein of unknown function DUF883, ElaB [Burkholderia sp. 383], gi\|779... gi\|118713702, gi... - gi\|170732133\|ref\|YP_001764080.1\| protein of unknown function DUF883 ElaB [Burkholderia cenocepacia M... gi\|67094975, gi\|... - gi\|67657561\|ref\|ZP_00454939.1\| protein of unknown function DUF883 [Burkholderia cenocepacia AU 1054]... gi\|84356899 - gi\|84356899\|ref\|ZP_00981731.1\| COG4575: Uncharacterized conserved protein [Burkholderia cenocepacia ... gi\|67103873, gi\|... - gi\|67662556\|ref\|ZP_00459844.1\| protein of unknown function DUF883 [Burkholderia cenocepacia HI2424],...	2.0E-22	[8..102]	[6..100]
gi\|170702514, gi... - gi\|170702514\|ref\|ZP_02893393.1\| protein of unknown function DUF883 ElaB [Burkholderia ambifaria IOP4... gi\|74017032, gi\|... - gi\|74017032\|ref\|ZP_00687657.1\| protein of unknown function DUF883 [Burkholderia ambifaria AMMD], gi\|... gi\|172059769, gi... - gi\|172059769\|ref\|YP_001807421.1\| protein of unknown function DUF883 ElaB [Burkholderia ambifaria MC4...	2.0E-22	[8..102]	[6..100]
gi\|238717743, gi... - gi\|77961203\|ref\|ZP_00825047.1\| COG4575: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	2.0E-22	[1..102]	[1..102]
gi\|82538556 - gi\|82538556\|ref\|ZP_00897549.1\| hypothetical protein Bpse110_02000251 [Burkholderia pseudomallei 1106... gi\|100236793, gi... - gi\|83680803\|ref\|ZP_00942507.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|82531540 - gi\|82531540\|ref\|ZP_00890758.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|52210773, gi\|... - gi\|53720359\|ref\|YP_109345.1\| hypothetical protein BPSL2749 [Burkholderia pseudomallei K96243], gi\|52... gi\|167904041 - gi\|167904041\|ref\|ZP_02491246.1\| hypothetical protein BpseN_17454 [Burkholderia pseudomallei NCTC 131... gi\|167912298 - gi\|167912298\|ref\|ZP_02499389.1\| hypothetical protein Bpse112_17565 [Burkholderia pseudomallei 112] gi\|167847064 - gi\|167847064\|ref\|ZP_02472572.1\| hypothetical protein BpseB_17455 [Burkholderia pseudomallei B7210] gi\|167895649 - gi\|167895649\|ref\|ZP_02483051.1\| hypothetical protein Bpse7_18044 [Burkholderia pseudomallei 7894] gi\|167920256 - gi\|167920256\|ref\|ZP_02507347.1\| hypothetical protein BpseBC_17047 [Burkholderia pseudomallei BCC215] gi\|67739563 - gi\|67739563\|ref\|ZP_00490123.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|67757501, gi\|... - gi\|67757501\|ref\|ZP_00496377.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|99913800, gi\|... - gi\|99913800\|ref\|ZP_01320397.1\| hypothetical protein Bpse1_03000088 [Burkholderia pseudomallei 1655],... gi\|67686187, gi\|... - gi\|90294941\|ref\|ZP_01214532.1\| hypothetical protein Bpse17_02000428 [Burkholderia pseudomallei 1710a... gi\|167744516 - gi\|167744516\|ref\|ZP_02417290.1\| hypothetical protein Bpse14_40978 [Burkholderia pseudomallei 14] gi\|167817168 - gi\|167817168\|ref\|ZP_02448848.1\| hypothetical protein Bpse9_18662 [Burkholderia pseudomallei 91] gi\|67761398, gi\|... - gi\|67761398\|ref\|ZP_00500108.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|76810265, gi\|... - gi\|76810265\|ref\|YP_334612.1\| transmembrane protein [Burkholderia pseudomallei 1710b], gi\|76579718\|gb... gi\|167720974 - gi\|167720974\|ref\|ZP_02404210.1\| hypothetical protein BpseD_18344 [Burkholderia pseudomallei DM98]	7.0E-22	[8..102]	[6..100]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRDNEPPTS LEDDLAMLTD TLEEVLRYSG TLADESYQEI KARAEKALKE VQSRLSDHGG  60
   61 CHIKQIKAMA CCTDDYVRQN PWCSVGIGAT IGLIVGLLVA RR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits