YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16123074, gi\|...
Organism:	Yersinia pestis CO92
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16123074, gi|....

Description	E-value	Query Range	Subject Range
RLMN_YERPY - Dual-specificity RNA methyltransferase RlmN OS=Yersinia pseudotuberculosis serotype O:3 (strain YPII... RLMN_YERP3 - Dual-specificity RNA methyltransferase RlmN OS=Yersinia pseudotuberculosis serotype O:1b (strain IP ...	0.0	[1..398]	[1..398]
gi\|77977355, gi\|... - gi\|77977355\|ref\|ZP_00832806.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Yersinia intermedia ATC...	0.0	[1..398]	[1..398]
gi\|77974673, gi\|... - gi\|77974673\|ref\|ZP_00830212.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Yersinia frederiksenii ...	0.0	[1..398]	[1..398]
gi\|238713771, gi... - gi\|77957194\|ref\|ZP_00821256.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Yersinia bercovieri ATC...	0.0	[1..398]	[1..398]
gi\|238718166, gi... - gi\|77963424\|ref\|ZP_00827234.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Yersinia mollaretii ATC...	0.0	[1..398]	[1..398]
gi\|83570737, gi\|... - gi\|83570737\|ref\|ZP_00922180.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Shigella dysenteriae 10...	0.0	[1..398]	[1..384]
gi\|1799916, gi\|8... - gi\|89109323\|ref\|AP_003103.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|179... EG12401 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent / 23S rRNA m(2)A2... RLMN_ECOUT - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain UTI89 / UPEC) GN=rlmN PE=3 S... RLMN_ECOL5 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rl... RLMN_SHIBS - Dual-specificity RNA methyltransferase RlmN OS=Shigella boydii serotype 4 (strain Sb227) GN=rlmN PE=... RLMN_ECOK1 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O1:K1 / APEC GN=rlmN PE=3 SV=1 RLMN_ECOSM - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rlmN PE=... RLMN_SHIDS - Dual-specificity RNA methyltransferase RlmN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rlm... gi\|124531245, gi... - gi\|124531245\|ref\|ZP_01701587.1\| radical SAM enzyme, Cfr family [Escherichia coli B], gi\|124498691\|gb... RLMN_ECOLC - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crook... RLMN_SHISS - Dual-specificity RNA methyltransferase RlmN OS=Shigella sonnei (strain Ss046) GN=rlmN PE=3 SV=1 RLMN_ECODH - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain K12 / DH10B) GN=rlmN PE=3 SV... RLMN_ECOSE - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain SE11) GN=rlmN PE=3 SV=1 RLMN_ECO27 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=... RLMN_ECO8A - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O8 (strain IAI1) GN=rlmN PE=3 SV=1 RLMN_ECO45 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rlmN ... gi\|194427328, gi... - gi\|75211483\|ref\|ZP_00711573.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli B171],... RLMN_ECO24 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=... RLMN_SHIB3 - Dual-specificity RNA methyltransferase RlmN OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS5... YFGB_ECOLI - UPF0063 protein yfgB - Escherichia coli gi\|194437563, gi... - gi\|83586834\|ref\|ZP_00925465.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli 101-1]... gi\|75515856, gi\|... - gi\|75515856\|ref\|ZP_00737991.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli 53638]... gi\|193064109, gi... - gi\|75257941\|ref\|ZP_00729415.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli E22], ... gi\|191172618, gi... - gi\|75240458\|ref\|ZP_00724392.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli F11], ... gi\|191167679, gi... - gi\|75229151\|ref\|ZP_00715723.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli B7A], ... RLMN_ECO81 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O81 (strain ED1a) GN=rlmN PE=3 SV=1 RLMN_ECO55 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain 55989 / EAEC) GN=rlmN PE=3 S... RLMN_ECO7I - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rlmN... gi\|254162491, gi... - gi\|254162491\|ref\|YP_003045599.1\| predicted enzyme [Escherichia coli B str. REL606], gi\|253974392\|gb\|... gi\|253772589, gi... - gi\|254289252\|ref\|YP_003055000.1\| predicted enzyme [Escherichia coli BL21(DE3)], gi\|253978559\|gb\|ACT4... gi\|242378115, gi... - gi\|251785842\|ref\|YP_003000146.1\| hypothetical protein B21_02371 [Escherichia coli BL21], gi\|24237811... RLMN_ECOBW - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rl... gi\|237705027, gi... - gi\|237705027\|ref\|ZP_04535508.1\| ribosomal RNA large subunit methyltransferase N [Escherichia sp. 3_2... EG12401 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent / 23S rRNA m(2)A2... sp\|B7UGW3\|RLMN_ECO27 - Ribosomal RNA large subunit methyltransferase N OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)...	0.0	[1..398]	[1..384]
RLMN_ECOL6 - Ribosomal RNA large subunit methyltransferase N OS=Escherichia coli O6 GN=rlmN PE=3 SV=1 RLMN_ECOL6 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|227835902, gi... - gi\|227887552\|ref\|ZP_04005357.1\| Fe-S-cluster oxidoreductase [Escherichia coli 83972], gi\|227835902\|g...	0.0	[1..398]	[1..384]
RLMN_ECOHS - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O9:H4 (strain HS) GN=rlmN PE=3 SV=1	0.0	[1..398]	[1..384]
gi\|193068396, gi... - gi\|75237737\|ref\|ZP_00721753.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli E11001...	0.0	[1..398]	[1..384]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQLLTAST PIDAAPLSDN TVQTTAPATS KINLLDLNRQ QMREFFAEMG EKPFRADQVM  60
   61 KWMYHYCYDD FEQMTDINKG LRAKLQRVAE IRAPEVAEEQ RSVDGTIKWA IKVGDQQVET 120
  121 VYIPEA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRATLCVSSQ VGCALECKFC STAQQGFNRN LRVSEIIGQV WRAAKIIGSL KSTGTRPITN  60
   61 VVMMGMGEPL LNLNNVVPAM DIMMDDFGFG LSKRRVTLST SGVVPALDKL GDMIDVALAI 120
  121 SLHAPTDDIR DEIVPINRKY NIETFLAAVR RYLDKSKANG GRVTVEYVML DHINDSTEQA 180
  181 HQLAECLKDT PCKINLIPWN PFPGAPYGRS SNSRVDRFSK VLMEYGFTTI VRKTRGDDID 240
  241 AACGQLAGEV IDRTKRTLKK KMAGEPIAIK TV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	1tv7A
Description:	Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48331922124015	bayes_pls_golite062009
transferase activity	0.685192555939835	bayes_pls_golite062009
binding	0.131941651473395	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: